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SCNpilot_bf_inoc_scaffold_677_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_677_curated_1
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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44..655
DNA (612bp) protein (204aa)
50S ribosomal protein L25 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S5_PALPW
LSU ribosomal protein l25p; K02897 large subunit ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_677_curated_2
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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666..1229
DNA (564bp) protein (188aa)
peptidyL-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Peptidyl-tRNA hydrolase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S4_PALPW
SCNpilot_bf_inoc_scaffold_677_curated_3
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1258..1665
DNA (408bp) protein (136aa)
Heat shock protein Hsp15 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S3_PALPW
heat shock protein hsp15; K04762 ribosome-associated heat shock protein Hsp15
Heat shock protein Hsp15 {ECO:0000313|EMBL:ADQ79367.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_677_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1683..2228
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S2_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79366.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_677_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2292..3167
DNA (876bp) protein (292aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S1_PALPW
SCNpilot_bf_inoc_scaffold_677_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3170..3724
DNA (555bp) protein (185aa)
dtdp-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ADQ79364.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ADQ79364.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S0_PALPW
SCNpilot_bf_inoc_scaffold_677_curated_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3901..4755
DNA (855bp) protein (285aa)
dtdp-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3R9_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_677_curated_8
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

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4760..6427
DNA (1668bp) protein (556aa)
hypothetical protein MzeaS_06256 id=4317271 bin=GWF2_Bacteroidetes_41_61 species=Mesoflavibacter zeaxanthinifaciens genus=Mesoflavibacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
glycosyl transferase family protein
Tax=BJP_IG2102_Bacteroidetes_40_12
SCNpilot_bf_inoc_scaffold_677_curated_9
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6438..7673)
DNA (1236bp) protein (412aa)
cys/met metabolism pyridoxaL-phosphate-dependent protein; K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RAB4_9BACE
O-acetylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:EOA53022.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
SCNpilot_bf_inoc_scaffold_677_curated_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7721..10180)
DNA (2460bp) protein (820aa)
phenylalanyL-tRNA synthetase beta subunit (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3R5_PALPW
SCNpilot_bf_inoc_scaffold_677_curated_11
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10426..12216
DNA (1791bp) protein (597aa)
amp-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3R4_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_677_curated_12
unknown

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12354..12530
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_677_curated_13
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12721..13575
DNA (855bp) protein (285aa)
ATP phosphoribosyltransferase (EC:2.4.2.17); K00765 ATP phosphoribosyltransferase [EC:2.4.2.17]
ATP phosphoribosyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3R1_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_677_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13589..14320
DNA (732bp) protein (244aa)
transcriptional acitvator, baf family (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33]
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Type III pantothenate kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3R0_PALPW
SCNpilot_bf_inoc_scaffold_677_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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14304..15560
DNA (1257bp) protein (419aa)
Putative outer membrane protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Q9_PALPW
outer membrane protein
Putative outer membrane protein {ECO:0000313|EMBL:ADQ79353.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_677_curated_16
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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15719..17119
DNA (1401bp) protein (467aa)
Tetratricopeptide repeat protein n=4 Tax=Bacteroidales RepID=C7XFV5_9PORP
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_677_curated_17
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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17156..17695
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Q8_PALPW
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_677_curated_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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17728..19620
DNA (1893bp) protein (631aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0X2_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78353.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_677_curated_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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19663..20469
DNA (807bp) protein (269aa)
Extracellular solute-binding protein family 3 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0X3_PALPW
family 3 extracellular solute-binding protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_677_curated_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20482..21399
DNA (918bp) protein (306aa)
homoserine O-succinyltransferase (EC:2.3.1.46); K00651 homoserine O-succinyltransferase [EC:2.3.1.46]
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Homoserine O-succinyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0X4_PALPW
SCNpilot_bf_inoc_scaffold_677_curated_21
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(21618..23276)
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 616 RepID=K1FLJ9_BACFG
Transposase IS4 family protein {ECO:0000313|EMBL:CEA16440.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
transposase
SCNpilot_bf_inoc_scaffold_677_curated_22
unknown

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23746..24561
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI000255A577
SCNpilot_bf_inoc_scaffold_677_curated_23
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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24710..26065
DNA (1356bp) protein (452aa)
PhoH family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0F2_PALPW
phoh family protein; K07175 PhoH-like ATPase
PhoH family protein {ECO:0000313|EMBL:ADQ78311.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_677_curated_24
Bacteroides eggerthii CAG:109, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(26060..27025)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Bacteroides eggerthii CAG:109 RepID=R5JVD5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCY56669.1}; TaxID=1263043 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides eggerthii CAG:109.;"
hypothetical protein
Displaying 24 items

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