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SCNpilot_bf_inoc_scaffold_680_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_680_curated_1
unknown

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comp(448..699)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_680_curated_2
Mucinivorans hirudinis, Mucinivorans, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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910..2505
DNA (1596bp) protein (532aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_6 RepID=C6IP74_9BACE
TPR-repeat-containing protein {ECO:0000313|EMBL:CDN30696.1}; TaxID=1433126 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Mucinivorans.;" source="Mucinivorans hirudinis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_680_curated_3
unknown

Not on your lists

comp(2575..2685)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_680_curated_4
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2713..4671
DNA (1959bp) protein (653aa)
DNA gyrase subunit b (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T529_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_680_curated_5
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4687..5628
DNA (942bp) protein (314aa)
Glycoside hydrolase family 16 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T531_PALPW
glycoside hydrolase family protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_680_curated_6
Bacteroides sp. CAG:545, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5662..6657
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000378AD23
Uncharacterized protein {ECO:0000313|EMBL:CCZ43421.1}; TaxID=1262742 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:545.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_680_curated_7
Prevotella sp. CAG:1058, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6678..7640)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035E776B
Uncharacterized protein {ECO:0000313|EMBL:CCX63732.1}; TaxID=1262918 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1058.;"
Protein of unknown function (DUF3184).
SCNpilot_bf_inoc_scaffold_680_curated_8
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(7627..9114)
DNA (1488bp) protein (496aa)
O-antigen polymerase id=4533310 bin=GWF2_Bacteroidetes_33_38 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
O-antigen polymerase
Tax=GWF2_Bacteroidetes_33_38_curated
SCNpilot_bf_inoc_scaffold_680_curated_9
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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9216..10064
DNA (849bp) protein (283aa)
Glycosyl transferase n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FST6_ECHVK
glycosyl transferase family protein
Glycosyl transferase {ECO:0000313|EMBL:AGA76357.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_bf_inoc_scaffold_680_curated_10
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

10106..11764
DNA (1659bp) protein (553aa)
Putative uncharacterized protein id=2912682 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=GWB1_Spirochaetes_59_5_curated
SCNpilot_bf_inoc_scaffold_680_curated_11
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(11770..12882)
DNA (1113bp) protein (371aa)
ABC-2 type transporter id=3166527 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
ABC transporter; K09686 antibiotic transport system permease protein
Tax=GWF2_Bacteroidetes_49_14_curated
SCNpilot_bf_inoc_scaffold_680_curated_12
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(12885..13991)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein id=3166529 bin=GWF2_Bacteroidetes_49_14 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
ABC transporter; K09686 antibiotic transport system permease protein
Tax=GWF2_Bacteroidetes_49_14_curated
SCNpilot_bf_inoc_scaffold_680_curated_13
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13993..14766)
DNA (774bp) protein (258aa)
sulfate-transporting ATPase (EC:3.6.3.25)
ABC transporter n=1 Tax=Flexithrix dorotheae RepID=UPI0003699120
ABC transporter {ECO:0000313|EMBL:ERM88339.1}; TaxID=1349822 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter fastidiosus NSB1.;"
SCNpilot_bf_inoc_scaffold_680_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14892..15866)
DNA (975bp) protein (325aa)
ABC transporter related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T802_PALPW
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADQ80846.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_680_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16029..16934)
DNA (906bp) protein (302aa)
Putative ABC transport system, lipoprotein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T803_PALPW
ABC transporter lipoprotein; K01993 HlyD family secretion protein
Putative ABC transport system, lipoprotein {ECO:0000313|EMBL:ADQ80847.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_680_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16953..18248)
DNA (1296bp) protein (432aa)
Outer membrane efflux protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T804_PALPW
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ADQ80848.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_680_curated_17
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(18343..22614)
DNA (4272bp) protein (1424aa)
Putative uncharacterized protein id=4337451 bin=GWF2_Bacteroidetes_35_48 species=unknown genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
activator of (R)-2-hydroxyglutaryl-CoA dehydratase rbh
Tax=GWF2_Bacteroidetes_35_48_curated
SCNpilot_bf_inoc_scaffold_680_curated_18
Bacteroidales bacterium CF, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22734..23426)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D4E5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY54294.1}; TaxID=1400053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales.;" source="Bacteroidales bacterium CF.;"
SCNpilot_bf_inoc_scaffold_680_curated_19
Capnocytophaga cynodegmi, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23454..24077)
DNA (624bp) protein (208aa)
TetR family transcriptional regulator n=1 Tax=Capnocytophaga cynodegmi RepID=UPI0003687F45
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CEN39034.1}; TaxID=28189 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga cynodegmi.;"
TetR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_680_curated_20
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24187..24564)
DNA (378bp) protein (126aa)
Protein CrcB homolog id=3979303 bin=GWF2_Bacteroidetes_33_16 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
Tax=GWE2_Bacteroidetes_32_14_curated
SCNpilot_bf_inoc_scaffold_680_curated_21
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24809..25144)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5ITF5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99339.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_680_curated_22
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25119..25748)
DNA (630bp) protein (210aa)
membrane protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036FF1D5
Uncharacterized protein {ECO:0000313|EMBL:EGJ99338.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_680_curated_23
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25774..26487)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037FB29D
Uncharacterized protein {ECO:0000313|EMBL:EGJ99337.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_680_curated_24
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26495..27514)
DNA (1020bp) protein (340aa)
Cobaltochelatase (EC:6.6.1.2); K02230 cobaltochelatase CobN [EC:6.6.1.2]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003711D78
Uncharacterized protein {ECO:0000313|EMBL:EGJ99336.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
SCNpilot_bf_inoc_scaffold_680_curated_25
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27484..30585)
DNA (3102bp) protein (1034aa)
Cobaltochelatase (EC:6.6.1.2); K02230 cobaltochelatase CobN [EC:6.6.1.2]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003711D78
Uncharacterized protein {ECO:0000313|EMBL:EGJ99336.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
SCNpilot_bf_inoc_scaffold_680_curated_26
Capnocytophaga sp. oral taxon 338, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30634..32838)
DNA (2205bp) protein (735aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003785CD3
TonB-dependent receptor {ECO:0000313|EMBL:EGD35206.1}; TaxID=888059 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 338 str. F0234.;"
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein
SCNpilot_bf_inoc_scaffold_680_curated_27
Capnocytophaga gingivalis, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32924..33553)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037B70B2
Uncharacterized protein {ECO:0000313|EMBL:EEK14790.1}; TaxID=553178 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga gingivalis ATCC 33624.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_680_curated_28
unknown

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comp(34222..34947)
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_680_curated_29
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35010..36095)
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000361F293
Outer membrane protein {ECO:0000313|EMBL:GAO30812.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
beta-lactamase
SCNpilot_bf_inoc_scaffold_680_curated_30
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(36121..36546)
DNA (426bp) protein (142aa)
Putative uncharacterized protein id=4525037 bin=GWF2_Bacteroidetes_40_14 species=Polaribacter irgensii genus=Polaribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
hypothetical protein
Tax=GWF2_Bacteroidetes_40_14_curated
Displaying 30 items

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