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SCNpilot_bf_inoc_scaffold_1523_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1523_curated_1
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1..978)
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X1Z5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05811.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hemerythrin HHE cation binding domain-containing protein; K09155 hypothetical protein
SCNpilot_bf_inoc_scaffold_1523_curated_2
unknown

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comp(1178..1582)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1523_curated_3
unknown

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comp(1609..1983)
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1523_curated_4
unknown

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comp(2098..2466)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1523_curated_5
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2692..4491)
DNA (1800bp) protein (600aa)
Tetratricopeptide repeat protein n=4 Tax=Parabacteroides RepID=C7X3V6_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EEU52576.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
Tetratricopeptide repeat.
SCNpilot_bf_inoc_scaffold_1523_curated_6
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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5040..5375
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11RV3_CYTH3
Strain DSM 12611 Contig02, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54780.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1523_curated_7
Bacteroides helcogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5832..9071
DNA (3240bp) protein (1080aa)
TonB-dependent receptor plug n=1 Tax=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) RepID=E6STR8_BACT6
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADV42271.1}; Flags: Precursor;; TaxID=693979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P; 36-108).;"
SCNpilot_bf_inoc_scaffold_1523_curated_8
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9087..11093
DNA (2007bp) protein (669aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 3_2_5 RepID=C6IAZ3_9BACE
Putative starch-binding domain {ECO:0000313|EMBL:CEA15005.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1523_curated_9
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11753..14950)
DNA (3198bp) protein (1066aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5Z0A5_9PORP
SCNpilot_bf_inoc_scaffold_1523_curated_10
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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15194..19177
DNA (3984bp) protein (1328aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZXK6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB54028.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
Signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_1523_curated_11
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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19307..20761
DNA (1455bp) protein (485aa)
Carbon starvation protein A id=4337562 bin=GWF2_Bacteroidetes_35_48 species=Clostridium tetani genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
carbon starvation protein A rbh
Tax=GWF2_Bacteroidetes_35_48_curated
SCNpilot_bf_inoc_scaffold_1523_curated_12
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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20981..21961
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 610 RepID=K1GF01_BACFG
Uncharacterized protein {ECO:0000313|EMBL:GAK37715.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
nitroreductase domain protein
SCNpilot_bf_inoc_scaffold_1523_curated_13
Bacteroides sp. CAG:754, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(21965..22567)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:754 RepID=R6DNA5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDA86389.1}; TaxID=1262750 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:754.;"
Predicted oxidoreductase related to nitroreductase
SCNpilot_bf_inoc_scaffold_1523_curated_14
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(22624..23568)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 610 RepID=K1GBS0_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EKA88996.1}; TaxID=1073386 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 610.;"
glycosyl transferase, family 4, conserved region
SCNpilot_bf_inoc_scaffold_1523_curated_15
RLO_Flavobacteria_35_11, Flavobacteriia, Bacteroidetes, Bacteria

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comp(23709..24671)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BWJ5_9BACT
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_35_11_curated
SCNpilot_bf_inoc_scaffold_1523_curated_16
Winogradskyella sp. PG-2, Winogradskyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(24676..26145)
DNA (1470bp) protein (490aa)
algI2; poly(beta-D-mannuronate) O-acetylase (EC:2.3.1.-)
O-acyltransferase n=1 Tax=Riemerella columbina RepID=UPI00035DDEDC
Probable poly(Beta-D-mannuronate) O-acetylase {ECO:0000313|EMBL:BAO75042.1}; TaxID=754409 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Winogradskyella.;" source="Winogradskyella sp. PG-2.;"
SCNpilot_bf_inoc_scaffold_1523_curated_17
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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26421..27332
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Bacteroides propionicifaciens RepID=UPI0003786D58
Uncharacterized protein {ECO:0000313|EMBL:EGK00291.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
putative AraC-family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1523_curated_18
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27851..30286
DNA (2436bp) protein (812aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036CFA91
Uncharacterized protein {ECO:0000313|EMBL:KKB54371.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
hypothetical protein rbh
SCNpilot_bf_inoc_scaffold_1523_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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30336..31385
DNA (1050bp) protein (350aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6V5_NIAKG
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEV97958.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_bf_inoc_scaffold_1523_curated_20
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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31382..32089
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. D2 RepID=E5C6G0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKB56625.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
LytTR family two component transcriptional regulator
Displaying 20 items

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