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SCNpilot_bf_inoc_scaffold_1522_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1522_curated_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1..945)
DNA (945bp) protein (315aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZR9_9PORP
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:CDD12399.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
aminotransferase
SCNpilot_bf_inoc_scaffold_1522_curated_2
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

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1188..1508
DNA (321bp) protein (107aa)
Putative uncharacterized protein id=4607784 bin=GWF2_Bacteroidetes_29_10 species=Methanococcus maripaludis genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
hypothetical protein
Tax=GWE2_Bacteroidetes_29_8_curated
SCNpilot_bf_inoc_scaffold_1522_curated_3
unknown

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1553..1780
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1522_curated_4
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

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1831..2703
DNA (873bp) protein (291aa)
hypothetical protein MsalJ2_12833 id=1790278 bin=GWE2_Bacteroidetes_42_24 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
hypothetical protein; K09116 hypothetical protein
Tax=GWF2_Bacteroidetes_43_11_curated
SCNpilot_bf_inoc_scaffold_1522_curated_5
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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2700..3566
DNA (867bp) protein (289aa)
cobyrinic acid ac-diamide synthase id=2916239 bin=GWF2_Bacteroidetes_40_14 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
cbiA4; cobyrinic acid a,c-diamide synthase CbiA4
Tax=GWF2_Bacteroidetes_40_14_curated
SCNpilot_bf_inoc_scaffold_1522_curated_6
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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3547..4413
DNA (867bp) protein (289aa)
Iron-sulfur cluster-binding/ATPase domain-containing protein id=1920984 bin=GWE2_Bacteroidetes_40_15 species=uncultured microorganism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
cobyrinic acid ac-diamide synthase
Tax=BJP_08E140C01_Bacteroidetes_41_49
SCNpilot_bf_inoc_scaffold_1522_curated_7
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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4403..4921
DNA (519bp) protein (173aa)
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase; K00798 cob(I)alamin adenosyltransferase [EC:2.5.1.17]
Cob(I)alamin adenosyltransferase id=2154982 bin=GWE2_Bacteroidetes_42_42 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_bf_inoc_scaffold_1522_curated_8
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4934..5404
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RET7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA54251.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
4Fe-4S ferredoxin
SCNpilot_bf_inoc_scaffold_1522_curated_9
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

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5438..6376
DNA (939bp) protein (313aa)
Radical SAM domain protein id=1790271 bin=GWE2_Bacteroidetes_42_24 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
hypothetical protein rbh
Tax=GWF2_Bacteroidetes_43_11_curated
SCNpilot_bf_inoc_scaffold_1522_curated_10
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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6384..6908
DNA (525bp) protein (175aa)
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase id=3845904 bin=GWF2_Bacteroidetes_38_335 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
Tax=RBG_13_Bacteroidetes_42_15_curated
SCNpilot_bf_inoc_scaffold_1522_curated_11
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

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6929..7771
DNA (843bp) protein (281aa)
ATPase-like, ParA/MinD id=1920987 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
Mrp/Nbp35 family ATP-binding protein; K03593 ATP-binding protein involved in chromosome partitioning
Tax=BJP_IG2102_Bacteroidetes_40_12
SCNpilot_bf_inoc_scaffold_1522_curated_12
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7768..8178
DNA (411bp) protein (137aa)
ybgC; thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Putative tol-pal system-associated acyl-CoA thioesterase id=4319879 bin=GWF2_Bacteroidetes_42_66 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_bf_inoc_scaffold_1522_curated_13
Sulfurovum sp. AS07-7, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

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8347..9063
DNA (717bp) protein (239aa)
alkyl hydroperoxide reductase; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Peroxiredoxin n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NXC3_9BACT
Peroxiredoxin {ECO:0000313|EMBL:KIM04853.1}; TaxID=1539062 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AS07-7.;"
SCNpilot_bf_inoc_scaffold_1522_curated_14
unknown

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comp(9173..9511)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1522_curated_15
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9580..10098)
DNA (519bp) protein (173aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB45143.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
hypothetical protein MsalJ2_01717 id=4652680 bin=GWF2_Bacteroidetes_40_14 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
SCNpilot_bf_inoc_scaffold_1522_curated_16
unknown

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comp(10091..10375)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1522_curated_17
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(10423..10971)
DNA (549bp) protein (183aa)
Sigma-70 family RNA polymerase sigma factor id=2063296 bin=GWD2_Bacteroidales_45_23 species=Odoribacter laneus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
rpoE; protein RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1522_curated_18
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11136..11645
DNA (510bp) protein (170aa)
Oxidoreductase n=2 Tax=Bacteroidales RepID=D0TC85_9BACE
C_GCAxxG_C_C family protein {ECO:0000313|EMBL:EKN29135.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1522_curated_19
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11649..12449)
DNA (801bp) protein (267aa)
metallo-beta-lactamase id=1873668 bin=GWE2_Bacteroidetes_42_39 species=Bacteroides faecis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
hydrolase; K06897
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_bf_inoc_scaffold_1522_curated_20
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12483..12800)
DNA (318bp) protein (106aa)
Putative uncharacterized protein id=3129734 bin=GWF2_Bacteroidetes_43_63 species=Methanococcus maripaludis genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
hypothetical protein
Tax=GWF2_Bacteroidetes_35_48_curated
SCNpilot_bf_inoc_scaffold_1522_curated_21
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

comp(12812..13279)
DNA (468bp) protein (156aa)
Uncharacterized protein id=2155027 bin=GWE2_Bacteroidetes_42_42 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=GWF2_Bacteroidetes_43_63_curated
SCNpilot_bf_inoc_scaffold_1522_curated_22
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(13386..14732)
DNA (1347bp) protein (449aa)
Outer membrane efflux protein n=3 Tax=Bacteroidales RepID=C7X403_9PORP
Outer membrane efflux family protein {ECO:0000313|EMBL:KDS71627.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
outer membrane protein TolC
SCNpilot_bf_inoc_scaffold_1522_curated_23
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14729..15052)
DNA (324bp) protein (108aa)
Cation/multidrug efflux pump n=2 Tax=root RepID=R6VBJ2_9BACT
Cation/multidrug efflux pump {ECO:0000313|EMBL:CDC95653.1}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
multidrug efflux membrane fusion protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Displaying 23 items

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