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SCNpilot_bf_inoc_scaffold_698_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_698_curated_1
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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210..575
DNA (366bp) protein (122aa)
KilA-N domain protein id=3934896 bin=GWC2_Bacteroidetes_46_850 species=Capnocytophaga sp. CM59 genus=Capnocytophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_698_curated_2
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(500..3139)
DNA (2640bp) protein (880aa)
Uncharacterized protein n=1 Tax=Coprobacter fastidiosus NSB1 RepID=U5CHC6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:ERM88366.1}; TaxID=1349822 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter fastidiosus NSB1.;"
TonB-dependent Receptor Plug Domain.
SCNpilot_bf_inoc_scaffold_698_curated_3
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3167..5353)
DNA (2187bp) protein (729aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ADQ79999.1}; EC=3.6.1.- {ECO:0000313|EMBL:ADQ79999.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
ATP-dependent DNA helicase recq (EC:3.6.1.-); K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5K5_PALPW
SCNpilot_bf_inoc_scaffold_698_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5600..6832)
DNA (1233bp) protein (411aa)
ATP-dependent clp protease ATP-binding subunit clpx (EC:3.4.21.92); K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5L2_PALPW
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_698_curated_5
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6832..7512)
DNA (681bp) protein (227aa)
ATP-dependent clp protease proteolytic subunit clpp (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5L3_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_698_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7524..8873)
DNA (1350bp) protein (450aa)
Trigger factor n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5L4_PALPW
trigger factor; K03545 trigger factor
Trigger factor {ECO:0000313|EMBL:ADQ80008.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_698_curated_7
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8988..10787)
DNA (1800bp) protein (600aa)
GTP-binding protein TypA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5L6_PALPW
GTP-binding protein TypA {ECO:0000313|EMBL:ADQ80010.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
GTP-binding protein typa; K06207 GTP-binding protein
SCNpilot_bf_inoc_scaffold_698_curated_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10887..12674
DNA (1788bp) protein (596aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Elongation factor 4 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T776_PALPW
GTP-binding protein lepa; K03596 GTP-binding protein LepA
SCNpilot_bf_inoc_scaffold_698_curated_9
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12687..13967
DNA (1281bp) protein (427aa)
Citrate transporter id=3316881 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
Citrate transporter
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_698_curated_10
Tannerella sp. 6_1_58FAA_CT1, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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14128..15495
DNA (1368bp) protein (456aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Tannerella sp. 6_1_58FAA_CT1 RepID=G9S257_9PORP
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=665949 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. 6_1_58FAA_CT1.;"
Na(+)/H(+) antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
SCNpilot_bf_inoc_scaffold_698_curated_11
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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15532..16485
DNA (954bp) protein (318aa)
K+-dependent Na+/Ca+ exchanger-like protein id=3692529 bin=GWF2_Bacteroidetes_33_16 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
K+dependent Na+ exchanger related-protein
Tax=GWE2_Bacteroidetes_32_14_curated
SCNpilot_bf_inoc_scaffold_698_curated_12
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16560..17081)
DNA (522bp) protein (174aa)
chromate transporter n=1 Tax=Butyricimonas synergistica RepID=UPI0003701F3C
Chromate ion transporter (CHR) family chromate transporter {ECO:0000313|EMBL:EEO27285.1}; TaxID=556268 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Oxalobacter.;" source="Oxalobacter formigenes HOxBLS.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_698_curated_13
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17081..18283)
DNA (1203bp) protein (401aa)
catalase; K00290 saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7]
saccharopine dehydrogenase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036C65C8
Saccharopine dehydrogenase {ECO:0000313|EMBL:CEA15990.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
SCNpilot_bf_inoc_scaffold_698_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18381..19385
DNA (1005bp) protein (335aa)
agmatine deiminase (EC:3.5.3.12)
Agmatine deiminase {ECO:0000313|EMBL:ADQ80949.1}; EC=3.5.3.12 {ECO:0000313|EMBL:ADQ80949.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Agmatine deiminase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8A5_PALPW
SCNpilot_bf_inoc_scaffold_698_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19407..20285
DNA (879bp) protein (293aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53]
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8A4_PALPW
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ADQ80948.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_698_curated_16
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

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20810..21178
DNA (369bp) protein (123aa)
ATPase id=2022985 bin=GWE2_Bacteroidetes_40_63 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good
Tax=GWE2_Bacteroidetes_40_63_curated
SCNpilot_bf_inoc_scaffold_698_curated_17
Serratia sp. DD3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21203..22585)
DNA (1383bp) protein (461aa)
Uncharacterized protein {ECO:0000313|EMBL:KEY59688.1}; TaxID=1410619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. DD3.;"
SCNpilot_bf_inoc_scaffold_698_curated_18
unknown

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comp(22696..24078)
DNA (1383bp) protein (461aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_698_curated_19
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24150..24722)
DNA (573bp) protein (191aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
2-dehydropantoate 2-reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T360_PALPW
SCNpilot_bf_inoc_scaffold_698_curated_20
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(24860..25240)
DNA (381bp) protein (127aa)
DNA-binding protein n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237CE6E
DNA-binding protein
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_bf_inoc_scaffold_698_curated_21
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(26058..26810)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X0Z0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK03468.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
Displaying 21 items

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