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SCNpilot_bf_inoc_scaffold_457_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_457_curated_1
Treponema putidum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

303..1004
DNA (702bp) protein (234aa)
Uncharacterized protein n=2 Tax=Treponema denticola RepID=M2C8R6_TREDN
Uncharacterized protein {ECO:0000313|EMBL:AIN93157.1}; TaxID=221027 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema putidum.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_457_curated_2
unknown

Not on your lists

1593..1826
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_457_curated_3
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

1866..2774
DNA (909bp) protein (303aa)
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_bf_inoc_scaffold_457_curated_4
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

2771..5170
DNA (2400bp) protein (800aa)
TonB-dependent receptor plug id=2985231 bin=GWF2_Bacteroidetes_49_14 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_bf_inoc_scaffold_457_curated_5
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5425..6168)
DNA (744bp) protein (248aa)
DNA-binding protein n=1 Tax=Riemerella columbina RepID=UPI00037A354E
Uncharacterized protein {ECO:0000313|EMBL:EIY78933.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_457_curated_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6254..8380)
DNA (2127bp) protein (709aa)
heterodimeric methylmalonyL-CoA mutase large subunit (EC:5.4.99.2); K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Heterodimeric methylmalonyl-CoA mutase large subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T386_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_7
Bacteroides cellulosilyticus CAG:158, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8460..9083)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus CL02T12C19 RepID=I8WNZ8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB69580.1}; TaxID=1263038 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides cellulosilyticus CAG:158.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_457_curated_8
Bacteroidetes bacterium oral taxon 272, Bacteroidetes, Bacteria

Not on your lists

comp(9127..10029)
DNA (903bp) protein (301aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000313|EMBL:EPT32790.1}; EC=2.5.1.74 {ECO:0000313|EMBL:EPT32790.1};; TaxID=888054 species="Bacteria; Bacteroidetes.;" source="Bacteroidetes bacterium oral taxon 272 str. F0290.;"
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037C50FE
1,4-dihydroxy-2-naphthoate octaprenyltransferase
SCNpilot_bf_inoc_scaffold_457_curated_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10057..11970)
DNA (1914bp) protein (638aa)
heterodimeric methylmalonyL-CoA mutase small subunit (EC:5.4.99.2); K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Heterodimeric methylmalonyl-CoA mutase small subunit {ECO:0000313|EMBL:ADQ79179.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ADQ79179.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Heterodimeric methylmalonyl-CoA mutase small subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T385_PALPW
SCNpilot_bf_inoc_scaffold_457_curated_10
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12241..13647
DNA (1407bp) protein (469aa)
d-glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12]
Uronate isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1X4_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_11
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13696..15291
DNA (1596bp) protein (532aa)
Sugar phosphate permease n=1 Tax=Flavobacterium sp. CF136 RepID=J3BZA3_9FLAO
Sugar phosphate permease {ECO:0000313|EMBL:EJL60879.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
Hexuronate transporter; K08191 MFS transporter, ACS family, hexuronate transporter
SCNpilot_bf_inoc_scaffold_457_curated_12
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15341..16612)
DNA (1272bp) protein (424aa)
alcohol dehydrogenase id=1885493 bin=GWD2_Bacteroidales_45_23 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
alcohol dehydrogenase zinc-binding domain-containing protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_457_curated_13
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16628..18589)
DNA (1962bp) protein (654aa)
Sorbitol-6-phosphate 2-dehydrogenase (EC:1.1.1.140)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003618E27
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_14
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18599..19762)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000360A043
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_15
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19764..22223)
DNA (2460bp) protein (820aa)
pdhE; PdhE (EC:1.2.4.4)
dehydrogenase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003784C52
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_16
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22243..23604)
DNA (1362bp) protein (454aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036154E5
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_17
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23759..25099)
DNA (1341bp) protein (447aa)
hypothetical protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000364D9AE
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_457_curated_18
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25221..26693)
DNA (1473bp) protein (491aa)
rhamnulose kinase/L-fuculose kinase; K00848 rhamnulokinase [EC:2.7.1.5]
rhamnulokinase n=1 Tax=Alistipes sp. AP11 RepID=UPI0002EDDCA5
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_19
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27055..27945)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI000303088B
Uncharacterized protein {ECO:0000313|EMBL:KFC59451.1}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_457_curated_20
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27999..29027)
DNA (1029bp) protein (343aa)
L-rhamnose-proton symport protein (RhaT) n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=E2NA70_9BACE
L-rhamnose-H+ transporter {ECO:0000313|EMBL:EOS19794.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
rhamnose-proton symporter; K02856 L-rhamnose-H+ transport protein
SCNpilot_bf_inoc_scaffold_457_curated_21
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29171..30433)
DNA (1263bp) protein (421aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
L-rhamnose isomerase (EC:5.3.1.14); K01813 L-rhamnose isomerase [EC:5.3.1.14]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037EF946
SCNpilot_bf_inoc_scaffold_457_curated_22
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30679..31152
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000379FA8B
Uncharacterized protein {ECO:0000313|EMBL:KKB47651.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
non-specific DNA-binding protein Dps; K04047 starvation-inducible DNA-binding protein
SCNpilot_bf_inoc_scaffold_457_curated_23
RIFOXYA2_FULL_OD1_Falkowbacteria_47_19_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(31260..33800)
DNA (2541bp) protein (847aa)
hypothetical protein n=1 Tax=Catenovulum agarivorans RepID=UPI0002EEBAE6
hypothetical protein
Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_47_19_curated
SCNpilot_bf_inoc_scaffold_457_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34056..34604
DNA (549bp) protein (183aa)
Translation initiation factor IF-3 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S7_PALPW
bacterial translation initiation factor 3 (bif-3); K02520 translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_457_curated_25
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


34636..34830
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=9 Tax=Bacteroidales RepID=RL35_PARD8
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
SCNpilot_bf_inoc_scaffold_457_curated_26
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


34936..35286
DNA (351bp) protein (117aa)
50S ribosomal protein L20 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3S9_PALPW
LSU ribosomal protein l20p; K02887 large subunit ribosomal protein L20
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_27
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35544..36257
DNA (714bp) protein (238aa)
Probable transcriptional regulatory protein Palpr_0838 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2P6_PALPW
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_28
Bacteroides fluxus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36289..37818)
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI000361A3AF
Uncharacterized protein {ECO:0000313|EMBL:EGF59405.1}; TaxID=763034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fluxus YIT 12057.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_457_curated_29
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37849..38904)
DNA (1056bp) protein (352aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T095_PALPW
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_457_curated_30
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38958..40298)
DNA (1341bp) protein (447aa)
Fmu (Sun) domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0C8_PALPW
fmu (sun) domain protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ADQ78287.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying items 1-30 of 33 in total

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