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SCNpilot_bf_inoc_scaffold_1532_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1532_curated_1
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..325
DNA (324bp) protein (108aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Parabacteroides sp. D25 RepID=K6AHG7_9PORP
membrane fusion efflux protein; K02005 HlyD family secretion protein
HlyD family secretion protein {ECO:0000313|EMBL:KEJ85174.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
SCNpilot_bf_inoc_scaffold_1532_curated_2
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

343..1689
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5YKE1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN14232.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
outer membrane transport/efflux protein; K12340 outer membrane channel protein
SCNpilot_bf_inoc_scaffold_1532_curated_3
Tannerella sp. oral taxon BU063, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1770..2594)
DNA (825bp) protein (275aa)
Elongation factor Ts n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UHX0_TANFA
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1411148 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. oral taxon BU063 isolate Cell 2.;"
tsf; translation elongation factor Ts; K02357 elongation factor Ts
SCNpilot_bf_inoc_scaffold_1532_curated_4
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(2717..3559)
DNA (843bp) protein (281aa)
30S ribosomal protein S2 n=3 Tax=Parabacteroides RepID=K5ZQQ9_9PORP
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
SCNpilot_bf_inoc_scaffold_1532_curated_5
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(3697..4083)
DNA (387bp) protein (129aa)
30S ribosomal protein S9 n=3 Tax=Parabacteroides RepID=K5ZQ72_9PORP
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_bf_inoc_scaffold_1532_curated_6
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(4089..4544)
DNA (456bp) protein (152aa)
50S ribosomal protein L13 n=9 Tax=Bacteroidales RepID=A6LHM5_PARD8
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
SCNpilot_bf_inoc_scaffold_1532_curated_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4744..5364)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y590_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13567.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1532_curated_8
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6487..7794
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Bacteroides oleiciplenus YIT 12058 RepID=K9EC13_9BACE
Phage integrase family protein {ECO:0000313|EMBL:EXY86184.1}; TaxID=1339283 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3996 N(B) 6.;"
Site-specific recombinase XerD
SCNpilot_bf_inoc_scaffold_1532_curated_9
unknown

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7745..8773
DNA (1029bp) protein (343aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_10
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8911..9258
DNA (348bp) protein (116aa)
DNA binding domain, excisionase family n=2 Tax=Parabacteroides RepID=E1Z149_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN29733.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
SCNpilot_bf_inoc_scaffold_1532_curated_11
unknown

Not on your lists

9258..9530
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_12
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9527..10303
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Bacteroides salyersiae CL02T12C01 RepID=I9TG27_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY68191.1}; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C01.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1532_curated_13
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10308..11732
DNA (1425bp) protein (475aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Replicative DNA helicase n=1 Tax=Bacteroides finegoldii CAG:203 RepID=R6SA06_9BACE
Replicative DNA helicase {ECO:0000313|EMBL:KKB46918.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
SCNpilot_bf_inoc_scaffold_1532_curated_14
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11744..12004
DNA (261bp) protein (87aa)
VRR-NUC domain protein n=1 Tax=Bacteroides sp. CAG:189 RepID=R5J7S5_9BACE
VRR-NUC domain protein {ECO:0000313|EMBL:CCY50628.1}; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
SCNpilot_bf_inoc_scaffold_1532_curated_15
unknown

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12025..12468
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_16
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12476..14983
DNA (2508bp) protein (836aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X559_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB55326.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
hypothetical protein LOC687472
SCNpilot_bf_inoc_scaffold_1532_curated_17
unknown

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14980..15228
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_18
unknown

Not on your lists

15225..15380
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_19
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15371..16003
DNA (633bp) protein (211aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB55322.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
SCNpilot_bf_inoc_scaffold_1532_curated_20
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16000..18411
DNA (2412bp) protein (804aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB55323.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
SCNpilot_bf_inoc_scaffold_1532_curated_21
unknown

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18480..19367
DNA (888bp) protein (296aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_22
unknown

Not on your lists

19370..19531
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_23
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19757..20305
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=C9KYX3_9BACE
DNA packaging protein {ECO:0000313|EMBL:AII63194.1}; TaxID=357276 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei.;"
bacteriophage packaging protein gp3-like protein
SCNpilot_bf_inoc_scaffold_1532_curated_24
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20447..20917
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=2 Tax=Dysgonomonas RepID=F8X561_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04667.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
SCNpilot_bf_inoc_scaffold_1532_curated_25
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20989..21273)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Bacteroides massiliensis dnLKV3 RepID=R9I992_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKB59951.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
regulatory protein
SCNpilot_bf_inoc_scaffold_1532_curated_26
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21441..21707
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2ASP6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS18665.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
SCNpilot_bf_inoc_scaffold_1532_curated_27
unknown

Not on your lists

21853..22065
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_28
unknown

Not on your lists

22073..22372
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1532_curated_29
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22399..22668
DNA (270bp) protein (90aa)
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:KKB59977.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
SCNpilot_bf_inoc_scaffold_1532_curated_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22937..23998)
DNA (1062bp) protein (354aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZQT0_9PORP
Displaying items 1-30 of 31 in total

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