ggKbase home page

SCNpilot_bf_inoc_scaffold_476_curated

Search features with annotation key words

Displaying items 31-60 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_476_curated_31
Bacteroides sp. 3_1_33FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35965..37131
DNA (1167bp) protein (389aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=C3PUT8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEZ21958.1}; TaxID=457391 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_33FAA.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_32
Prevotella oulorum, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37994..38833
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Prevotella amnii RepID=UPI00037D113F
Uncharacterized protein {ECO:0000313|EMBL:EGV31764.1}; TaxID=702438 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella oulorum F0390.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_33
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39097..40584)
DNA (1488bp) protein (496aa)
Uncharacterized protein id=1874025 bin=GWD2_Bacteroidales_45_23 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
putative transcriptional regulator
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_476_curated_34
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

41013..43766
DNA (2754bp) protein (918aa)
type III restriction protein res subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type III restriction protein res subunit n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QXB3_OLSUV
Type III restriction protein res subunit {ECO:0000313|EMBL:ADK68766.1}; TaxID=633147 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 /; VPI D76D-27C) (Lactobacillus uli).;"
SCNpilot_bf_inoc_scaffold_476_curated_35
Prevotella intermedia, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43795..45657
DNA (1863bp) protein (621aa)
Uncharacterized protein n=2 Tax=Prevotella oralis RepID=E7RPN6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJJ87491.1}; TaxID=1347790 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella intermedia ZT.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_36
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

45690..47165
DNA (1476bp) protein (492aa)
adenine-specific DNA-methyltransferase (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:ADK68765.1}; EC=2.1.1.72 {ECO:0000313|EMBL:ADK68765.1};; TaxID=633147 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 /; VPI D76D-27C) (Lactobacillus uli).;"
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QXB2_OLSUV
SCNpilot_bf_inoc_scaffold_476_curated_37
Actinobacillus pleuropneumoniae, Actinobacillus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47168..48559
DNA (1392bp) protein (464aa)
restriction-modification enzyme; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Putative restriction-modification enzyme n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2F3_ACTP7
Putative restriction-modification enzyme {ECO:0000313|EMBL:ACE62178.1}; TaxID=537457 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus.;" source="Actinobacillus pleuropneumoniae serotype 7 (strain AP76).;"
SCNpilot_bf_inoc_scaffold_476_curated_38
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48554..48922)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003698702
Uncharacterized protein {ECO:0000313|EMBL:EKA84166.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
restriction modification system DNA specificity subunit
SCNpilot_bf_inoc_scaffold_476_curated_39
Prevotella melaninogenica, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

49154..49957
DNA (804bp) protein (268aa)
integrase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036C94FE
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EFC73829.1}; Flags: Fragment;; TaxID=575612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella melaninogenica D18.;"
site-specific recombinase, phage integrase family
SCNpilot_bf_inoc_scaffold_476_curated_40
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49990..51030)
DNA (1041bp) protein (347aa)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9Y9_9CLOT
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:CDD74143.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hsdS1; type I site-specific deoxyribonuclease
SCNpilot_bf_inoc_scaffold_476_curated_41
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(51288..52475)
DNA (1188bp) protein (396aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IX05_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02352.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
mobilization protein BmgA
SCNpilot_bf_inoc_scaffold_476_curated_42
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(52465..52815)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IX06_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02353.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
mobilization protein
SCNpilot_bf_inoc_scaffold_476_curated_43
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(53168..53731)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X3Q9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05369.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_44
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

54087..54401
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X3Q7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05367.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_45
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

54420..54719
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X3Q5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05365.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_46
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54927..56180)
DNA (1254bp) protein (418aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IX98_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02081.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
tyrosine type site-specific recombinase rbh
SCNpilot_bf_inoc_scaffold_476_curated_47
Bacteroidales bacterium CF, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

57159..57689
DNA (531bp) protein (177aa)
Dihydrofolate reductase {ECO:0000313|EMBL:AGY54288.1}; EC=1.5.1.3 {ECO:0000313|EMBL:AGY54288.1};; TaxID=1400053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales.;" source="Bacteroidales bacterium CF.;"
Dihydrofolate reductase n=1 Tax=Bacteroidales bacterium CF RepID=U5Q760_9BACT
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_48
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

57745..58233
DNA (489bp) protein (163aa)
RNA polymerase sigma-70 factor, expansion family 1 n=2 Tax=Parabacteroides RepID=N2B0F4_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:KKB56425.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
RNA polymerase ECF-type sigma factor,sigma70 superfamily
SCNpilot_bf_inoc_scaffold_476_curated_49
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

58245..59030
DNA (786bp) protein (262aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5Z0B6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS16028.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
anti-FecI sigma factor FecR
SCNpilot_bf_inoc_scaffold_476_curated_50

Not on your lists

59686..61431
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YGX3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD31688.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TonB-dependent receptor plug
SCNpilot_bf_inoc_scaffold_476_curated_51
unknown

Not on your lists

61524..61874
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_476_curated_52
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

62537..63331
DNA (795bp) protein (265aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) RepID=E6SPZ5_BACT6
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:GAK37308.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
phosphoesterase PA-phosphatase related protein
SCNpilot_bf_inoc_scaffold_476_curated_53
Odoribacter laneus CAG:561, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

63344..64075
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Odoribacter laneus CAG:561 RepID=R5VK36_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCZ81037.1}; TaxID=1263089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter laneus CAG:561.;"
glycosyl transferase 2
SCNpilot_bf_inoc_scaffold_476_curated_54
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

64089..64736
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=Odoribacter laneus YIT 12061 RepID=H1DJ13_9PORP
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:GAK37327.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
lipid A biosynthesis domain-containing protein
SCNpilot_bf_inoc_scaffold_476_curated_55
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

64733..65755
DNA (1023bp) protein (341aa)
nad-dependent epimerase/dehydratase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
NAD-dependent epimerase/dehydratase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TQC0_MARTH
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADR22643.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
SCNpilot_bf_inoc_scaffold_476_curated_56
Sanguibacteroides justesenii, Sanguibacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

65779..67347
DNA (1569bp) protein (523aa)
Glycosyl transferase family 39 n=1 Tax=Odoribacter splanchnicus CAG:14 RepID=R6FDZ4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KIO44481.1}; TaxID=1547597 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Sanguibacteroides.;" source="Sanguibacteroides justesenii.;"
glycosyl transferase 39
SCNpilot_bf_inoc_scaffold_476_curated_57
Plasmodium falciparum, Plasmodium, Haemosporida, Aconoidasida, Apicomplexa, Eukaryota

Not on your lists

67452..68063
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Plasmodium falciparum (isolate 3D7) RepID=Q8IE65_PLAF7
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD52401.1}; TaxID=36329 species="Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).;" source="Plasmodium falciparum (isolate 3D7).;"
SCNpilot_bf_inoc_scaffold_476_curated_58
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

68165..68587
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J2I6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK00087.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_476_curated_59
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

68592..69071
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003604C7E
Uncharacterized protein {ECO:0000313|EMBL:EXY40995.1}; TaxID=1339308 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3774 T13.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_476_curated_60
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

69237..70562
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000362483C
RND transporter MFP subunit {ECO:0000313|EMBL:KGN74959.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
cation efflux system protein
Displaying items 31-60 of 61 in total

View Taxonomy