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SCNpilot_bf_inoc_scaffold_600_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_600_curated_1
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..812)
DNA (810bp) protein (270aa)
ABC transporter, ATP-binding protein n=4 Tax=Parabacteroides RepID=A6LD60_PARD8
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDB49393.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
SCNpilot_bf_inoc_scaffold_600_curated_2
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1133..2491
DNA (1359bp) protein (453aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2AP30_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB47719.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_600_curated_3
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2554..4143
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5ZAK8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08220.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_600_curated_4
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4342..4935
DNA (594bp) protein (198aa)
Sigma-70 region 2 n=2 Tax=Bacteroidales RepID=D0TJ85_9BACE
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Sigma-70 region 2 {ECO:0000313|EMBL:EEY81781.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
SCNpilot_bf_inoc_scaffold_600_curated_5
unknown

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5015..5194
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_600_curated_6
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5235..5885
DNA (651bp) protein (217aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TJ87_9BACE
SCNpilot_bf_inoc_scaffold_600_curated_7
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5892..7484
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5YS76_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB50693.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
competence protein; K02238 competence protein ComEC
SCNpilot_bf_inoc_scaffold_600_curated_8
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7522..8571
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZQZ9_9PORP
DHHA1 domain protein {ECO:0000313|EMBL:EEC97462.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
exopolyphosphatase-like protein; K06881 phosphoesterase RecJ domain-containing protein
SCNpilot_bf_inoc_scaffold_600_curated_9
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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8651..9220
DNA (570bp) protein (190aa)
Uncharacterized protein n=7 Tax=Bacteroidales RepID=A6LCN0_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKN25865.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
SCNpilot_bf_inoc_scaffold_600_curated_10
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9230..10618
DNA (1389bp) protein (463aa)
phosphoglucomutase; K01840 phosphomannomutase [EC:5.4.2.8]
Phosphoglucosamine mutase n=1 Tax=Parabacteroides sp. D25 RepID=K5ZYH5_9PORP
Phosphoglucosamine mutase {ECO:0000313|EMBL:EKN32077.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
SCNpilot_bf_inoc_scaffold_600_curated_11
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10692..11192)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZQZ6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX78681.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
NTP pyrophosphohydrolase
SCNpilot_bf_inoc_scaffold_600_curated_12
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11469..11894
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IU04_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99137.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
Glyoxalase/bleomycin resistance protein/dioxygenase; K04750 PhnB protein
SCNpilot_bf_inoc_scaffold_600_curated_13
unknown

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12164..13018
DNA (855bp) protein (285aa)
integral membrane sensor signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_600_curated_14
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13087..13599)
DNA (513bp) protein (171aa)
Flavodoxin n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K6A860_9PORP
Flavodoxin {ECO:0000256|PIRNR:PIRNR038996}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
fldA; flavodoxin FldA; K03839 flavodoxin I
SCNpilot_bf_inoc_scaffold_600_curated_15
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13755..14579)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K5ZXC4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN31657.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
transmembrane protein and transcriptional regulator
SCNpilot_bf_inoc_scaffold_600_curated_16
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(14595..15350)
DNA (756bp) protein (252aa)
Uncharacterized protein id=4655922 bin=GWF2_Bacteroidetes_40_14 species=Parabacteroides johnsonii genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
hypothetical protein
Tax=GWF2_Bacteroidetes_40_14_curated
SCNpilot_bf_inoc_scaffold_600_curated_17
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15644..16372
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2B035_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS19841.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_bf_inoc_scaffold_600_curated_18
Odoribacter laneus CAG:561, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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16579..17421
DNA (843bp) protein (281aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=1263089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter laneus CAG:561.;"
5-keto 4-deoxyuronate isomerase (EC:5.3.1.17)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Odoribacter laneus CAG:561 RepID=R5UQV3_9PORP
SCNpilot_bf_inoc_scaffold_600_curated_19
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17434..18879
DNA (1446bp) protein (482aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYJ4_PEDHD
Hexuronate transporter {ECO:0000313|EMBL:GAK35902.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
major facilitator superfamily protein; K08191 MFS transporter, ACS family, hexuronate transporter
SCNpilot_bf_inoc_scaffold_600_curated_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18895..19689
DNA (795bp) protein (265aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.69)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=3 Tax=Parabacteroides RepID=A7AJS4_9PORP
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD14687.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
SCNpilot_bf_inoc_scaffold_600_curated_21
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19697..20839
DNA (1143bp) protein (381aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=B7B897_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB54117.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_600_curated_22
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20988..22025
DNA (1038bp) protein (346aa)
GumN protein n=2 Tax=Bacteroides caccae RepID=A5ZG59_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23091.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
GumN protein; K09973 hypothetical protein
SCNpilot_bf_inoc_scaffold_600_curated_23
Bacteroides sp. D1, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22602..23222
DNA (621bp) protein (207aa)
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Bacteroides sp. D22 RepID=D7J4X0_9BACE
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EEO52702.2}; TaxID=556258 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D1.;"
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, Bacteroides expansion family 1
SCNpilot_bf_inoc_scaffold_600_curated_24
Bacteroides oleiciplenus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23346..24332
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Bacteroides oleiciplenus YIT 12058 RepID=K9EIF7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EKU88895.1}; TaxID=742727 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides oleiciplenus YIT 12058.;"
Fe2+-dicitrate sensor, membrane component
SCNpilot_bf_inoc_scaffold_600_curated_25
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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24377..27895
DNA (3519bp) protein (1173aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3ZK71_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH21110.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
TonB-dependent receptor plug
SCNpilot_bf_inoc_scaffold_600_curated_26
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27912..29273
DNA (1362bp) protein (454aa)
Uncharacterized protein n=2 Tax=Bacteroides uniformis RepID=I9A1D3_BACUN
Uncharacterized protein {ECO:0000313|EMBL:EIY82901.1}; TaxID=997890 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis CL03T12C37.;"
RagB/SusD domain-containing protein
SCNpilot_bf_inoc_scaffold_600_curated_27
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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29337..30248
DNA (912bp) protein (304aa)
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S5C8_PEDSD
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ADY52073.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_bf_inoc_scaffold_600_curated_28
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30259..31587
DNA (1329bp) protein (443aa)
Transporter, major facilitator family protein n=2 Tax=Bacteroides RepID=D4WCB6_BACOV
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFF53876.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
Sugar phosphate permease
SCNpilot_bf_inoc_scaffold_600_curated_29
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33933..38048
DNA (4116bp) protein (1372aa)
Response regulator receiver domain protein n=1 Tax=Bacteroides dorei 5_1_36/D4 RepID=C3RFI0_9BACE
Response regulator receiver domain protein {ECO:0000313|EMBL:EEO47789.1}; TaxID=556260 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei 5_1_36/D4.;"
two-component system sensor histidine kinase/response regulator, hybrid
SCNpilot_bf_inoc_scaffold_600_curated_30
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38176..39192
DNA (1017bp) protein (339aa)
arabinan endo-1,5-alpha-L-arabinosidase A; K06113 arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] rbh
Arabinan endo-1,5-alpha-L-arabinosidase n=1 Tax=Bacteroides thetaiotaomicron dnLKV9 RepID=R9H5S6_BACT4
Arabinan endo-1,5-alpha-L-arabinosidase {ECO:0000313|EMBL:EOR99422.1}; TaxID=1235785 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron dnLKV9.;"
Displaying items 1-30 of 39 in total

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