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SCNpilot_bf_inoc_scaffold_1053_curated

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1053_curated_1
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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92..1192
DNA (1101bp) protein (367aa)
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EEC97775.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EEC97775.1};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Antioxidant, AhpC/TSA family n=2 Tax=Parabacteroides johnsonii RepID=B7B701_9PORP
hypothetical protein
SCNpilot_bf_inoc_scaffold_1053_curated_2
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1226..2764
DNA (1539bp) protein (513aa)
Mg chelatase-like protein n=3 Tax=Parabacteroides RepID=K6A278_9PORP
Mg chelatase-like protein {ECO:0000313|EMBL:KKB46629.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
magnesium chelatase subunit ChlI; K07391 magnesium chelatase family protein
SCNpilot_bf_inoc_scaffold_1053_curated_3
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


2896..4935
DNA (2040bp) protein (680aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase n=2 Tax=Parabacteroides merdae RepID=A7AHG4_9PORP
SCNpilot_bf_inoc_scaffold_1053_curated_4
Bacteroidales bacterium CF, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5150..5455
DNA (306bp) protein (102aa)
ArsR Family Transcriptional Regulator n=1 Tax=Bacteroidales bacterium CF RepID=U5QAY0_9BACT
hypothetical protein
ArsR Family Transcriptional Regulator {ECO:0000313|EMBL:AGY54459.1}; TaxID=1400053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales.;" source="Bacteroidales bacterium CF.;"
SCNpilot_bf_inoc_scaffold_1053_curated_5
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

Not on your lists

5512..5748
DNA (237bp) protein (79aa)
Redox-active disulfide protein 2 id=2047598 bin=GWE2_Bacteroidetes_40_15 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=BJP_IG2102_Bacteroidetes_40_12
SCNpilot_bf_inoc_scaffold_1053_curated_6
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5755..6168
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5E3_PALPW
Uncharacterized protein {ECO:0000313|EMBL:GAO28464.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1053_curated_7
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6178..6873
DNA (696bp) protein (232aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5E4_PALPW
Cytochrome c biogenesis protein {ECO:0000313|EMBL:GAO28465.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
cytochrome c biogenesis protein transmembrane region
SCNpilot_bf_inoc_scaffold_1053_curated_8
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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6925..8247
DNA (1323bp) protein (441aa)
hypothetical protein AnHS1_03756 id=4133003 bin=GWF2_Bacteroidetes_39_10 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_39_10 organism_group=Bacteroidetes
permease
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_bf_inoc_scaffold_1053_curated_9
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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8231..9328
DNA (1098bp) protein (366aa)
hypothetical protein AnHS1_03751 id=1891429 bin=GWE2_Bacteroidetes_42_39 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_bf_inoc_scaffold_1053_curated_10
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

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9340..9714
DNA (375bp) protein (125aa)
DGC domain protein id=1856255 bin=GWD2_Bacteroidetes_33_33 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
hypothetical protein
Tax=GWD2_Bacteroidetes_33_33_curated
SCNpilot_bf_inoc_scaffold_1053_curated_11
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9872..10195
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K6AUA0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN19308.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_1053_curated_12
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10267..10722
DNA (456bp) protein (152aa)
arsenate reductase; K03741 arsenate reductase [EC:1.20.4.1]
Arsenate reductase {ECO:0000313|EMBL:GAK35711.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
proteiN-tyrosine phosphatase, low molecular weight id=2995575 bin=GWF2_Bacteroidetes_35_48 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
SCNpilot_bf_inoc_scaffold_1053_curated_13
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10742..11791
DNA (1050bp) protein (350aa)
Arsenical-resistance protein n=2 Tax=Bacteroides fragilis RepID=I9K6A0_BACFG
Arsenical-resistance protein {ECO:0000313|EMBL:EIZ00654.1}; TaxID=997881 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL05T12C13.;"
arsenical-resistance protein
SCNpilot_bf_inoc_scaffold_1053_curated_14
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11879..12847
DNA (969bp) protein (323aa)
Predicted permeases n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IQ95_9BACT
Predicted permeases
Predicted permeases {ECO:0000313|EMBL:CBK65107.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
SCNpilot_bf_inoc_scaffold_1053_curated_15
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12929..13732)
DNA (804bp) protein (268aa)
Putative metallo-beta-lactamase superfamily hydrolase n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JL22_9PORP
Putative metallo-beta-lactamase superfamily hydrolase {ECO:0000313|EMBL:CDE64273.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
metallo-beta-lactamase domain-containing protein
SCNpilot_bf_inoc_scaffold_1053_curated_16
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13736..14314)
DNA (579bp) protein (193aa)
hypothetical protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
Uncharacterized protein n=2 Tax=Bacteroides vulgatus RepID=A6L4N4_BACV8
SCNpilot_bf_inoc_scaffold_1053_curated_17
Bacteroides sp. 3_1_33FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14265..15797)
DNA (1533bp) protein (511aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=457391 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_33FAA.;"
hypothetical protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
Uncharacterized protein n=2 Tax=Bacteroides RepID=D1JXE5_9BACE
SCNpilot_bf_inoc_scaffold_1053_curated_18
BJP_IG2102_Flavobacteriales_34_12, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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16339..17988
DNA (1650bp) protein (550aa)
Probable sulfate permease n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XTQ1_FLAIG
sulfate permease
Tax=BJP_IG2102_Flavobacteriales_34_12
SCNpilot_bf_inoc_scaffold_1053_curated_19
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18087..19766)
DNA (1680bp) protein (560aa)
Sulfate permease n=2 Tax=Parabacteroides RepID=N2BBE0_9PORP
Sulfate permease {ECO:0000313|EMBL:KKB57111.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
sulfate transporter permease; K03321 sulfate permease, SulP family
SCNpilot_bf_inoc_scaffold_1053_curated_20
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20088..20666
DNA (579bp) protein (193aa)
Rubrerythrin n=3 Tax=Parabacteroides RepID=K6A3T3_9PORP
Rubrerythrin {ECO:0000313|EMBL:KKB46868.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
rubrerythrin
SCNpilot_bf_inoc_scaffold_1053_curated_21
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20734..22317)
DNA (1584bp) protein (528aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
nadB; putative exported L-aspartate oxidase; K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase n=3 Tax=Bacteroides RepID=I9I0H6_9BACE
SCNpilot_bf_inoc_scaffold_1053_curated_22
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22479..23882
DNA (1404bp) protein (468aa)
Peptidase, S41 family n=1 Tax=Bacteroides fluxus YIT 12057 RepID=F3PQ64_9BACE
Carboxyl-terminal protease {ECO:0000313|EMBL:GAK37723.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
peptidase S41
SCNpilot_bf_inoc_scaffold_1053_curated_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23941..25476)
DNA (1536bp) protein (512aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W0E2_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT91876.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_bf_inoc_scaffold_1053_curated_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25497..28766)
DNA (3270bp) protein (1090aa)
TonB-dependent receptor plug n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W0E3_DYAFD
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACT91877.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_bf_inoc_scaffold_1053_curated_25
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28859..30211
DNA (1353bp) protein (451aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=3 Tax=Parabacteroides RepID=K6A434_9PORP
SCNpilot_bf_inoc_scaffold_1053_curated_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30247..31005
DNA (759bp) protein (253aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AH33_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11978.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1053_curated_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30996..31757
DNA (762bp) protein (254aa)
uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen-III synthase n=7 Tax=Parabacteroides RepID=A7AH34_9PORP
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EDN85651.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
SCNpilot_bf_inoc_scaffold_1053_curated_28
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31754..32140
DNA (387bp) protein (129aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
rnpA; ribonuclease P (EC:3.1.26.5); K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZJ64_9PORP
SCNpilot_bf_inoc_scaffold_1053_curated_29
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32137..32358
DNA (222bp) protein (74aa)
Putative membrane protein insertion efficiency factor n=3 Tax=Parabacteroides RepID=K6A3P8_9PORP
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_bf_inoc_scaffold_1053_curated_30
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32360..33025
DNA (666bp) protein (222aa)
TatD-related DNase; K03424 TatD DNase family protein [EC:3.1.21.-]
Hydrolase, TatD family n=1 Tax=Parabacteroides sp. D13 RepID=C7X4V6_9PORP
Hydrolase, TatD family {ECO:0000313|EMBL:EEU52926.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
Displaying items 1-30 of 39 in total

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