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SCNpilot_bf_inoc_scaffold_1062_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1062_curated_1
Bacteroides sp. 2_2_4, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2..793)
DNA (792bp) protein (264aa)
TonB-dependent receptor n=1 Tax=Bacteroides sp. 2_2_4 RepID=C3QZA2_9BACE
TonB-dependent receptor {ECO:0000313|EMBL:EEO57286.1}; TaxID=469590 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_2_4.;"
outer membrane transport energization protein TonB (TC 2.C.1.1.1)
SCNpilot_bf_inoc_scaffold_1062_curated_2
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(813..1175)
DNA (363bp) protein (121aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZU83_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN19274.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_1062_curated_3
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1286..2161)
DNA (876bp) protein (292aa)
Transcriptional regulator, AraC family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YET9_9SPHI
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EHQ24356.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
AraC family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1062_curated_4
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2380..3423
DNA (1044bp) protein (348aa)
gluconate kinase; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
2-dehydro-3-deoxygluconokinase n=2 Tax=Parabacteroides RepID=N2AZ51_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB47185.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
SCNpilot_bf_inoc_scaffold_1062_curated_5
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3475..4143
DNA (669bp) protein (223aa)
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase (EC:4.1.2.14 4.1.3.16); K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Tannerella sp. CAG:118 RepID=R5IBS1_9PORP
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:CCY37784.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
SCNpilot_bf_inoc_scaffold_1062_curated_6
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4187..6280)
DNA (2094bp) protein (698aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2B5E9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB50258.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
SCNpilot_bf_inoc_scaffold_1062_curated_7
Bacteroides helcogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6334..7149)
DNA (816bp) protein (272aa)
YVTN beta-propeller repeat-containing protein n=1 Tax=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) RepID=E6SSA8_BACT6
hypothetical protein
YVTN beta-propeller repeat-containing protein {ECO:0000313|EMBL:ADV45159.1}; Flags: Precursor;; TaxID=693979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P; 36-108).;"
SCNpilot_bf_inoc_scaffold_1062_curated_8
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7681..8424)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RLT0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKB53048.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
SCNpilot_bf_inoc_scaffold_1062_curated_9
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8546..9172
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RJD7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKB53049.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
SCNpilot_bf_inoc_scaffold_1062_curated_10
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9176..9745
DNA (570bp) protein (190aa)
Probable molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256|HAMAP-Rule:MF_00316}; TaxID=1078089 species="Bacteri
molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Probable molybdenum cofactor guanylyltransferase n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RK72_9BACE
SCNpilot_bf_inoc_scaffold_1062_curated_11
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9742..11025
DNA (1284bp) protein (428aa)
MFS transporter, NNP family, nitrate/nitrite transporter n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RI35_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKB53051.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
major facilitator superfamily protein; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
SCNpilot_bf_inoc_scaffold_1062_curated_12
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11035..14760
DNA (3726bp) protein (1242aa)
narG; Respiratory nitrate reductase, alpha subunit; K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4]
Nitrate reductase, alpha subunit n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RHS2_9BACE
Nitrate reductase, alpha subunit {ECO:0000313|EMBL:EOA56164.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
SCNpilot_bf_inoc_scaffold_1062_curated_13
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14757..16226
DNA (1470bp) protein (490aa)
narH1; nitrate reductase subunit beta (EC:1.7.99.4); K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4]
Nitrate reductase, beta subunit n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RLS4_9BACE
Nitrate reductase, beta subunit {ECO:0000313|EMBL:EOA56163.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
SCNpilot_bf_inoc_scaffold_1062_curated_14
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16250..16798
DNA (549bp) protein (183aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RJD3_9BACE
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:KKB53054.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
respiratory nitrate reductase subunit delta
SCNpilot_bf_inoc_scaffold_1062_curated_15
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16795..17466
DNA (672bp) protein (224aa)
Nitrate reductase subunit gamma; K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4]
Respiratory nitrate reductase, gamma subunit n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RK66_9BACE
Respiratory nitrate reductase, gamma subunit {ECO:0000313|EMBL:KKB53055.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
SCNpilot_bf_inoc_scaffold_1062_curated_16
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18174..19448
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RI31_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA56160.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_bf_inoc_scaffold_1062_curated_17
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19455..19916
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RLS0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKB53057.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
SCNpilot_bf_inoc_scaffold_1062_curated_18
unknown

Not on your lists

19995..20390
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:443 RepID=R6MN63_9BACE
SCNpilot_bf_inoc_scaffold_1062_curated_19
Bacteroides coprocola, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20397..21356
DNA (960bp) protein (320aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=470145 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprocola DSM 17136.;"
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JQY0_9BACE
SCNpilot_bf_inoc_scaffold_1062_curated_20
Bacteroides coprocola CAG:162, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21346..22641
DNA (1296bp) protein (432aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=1263040 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides coprocol
adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] rbh
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Bacteroides coprocola CAG:162 RepID=R6CGF6_9BACE
SCNpilot_bf_inoc_scaffold_1062_curated_21
Bacteroides sp. CAG:462, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22638..23798
DNA (1161bp) protein (387aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47); K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
8-amino-7-oxononanoate synthase n=1 Tax=Bacteroides sp. CAG:462 RepID=R7CZZ0_9BACE
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:CDD83486.1}; TaxID=1262740 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:462.;"
SCNpilot_bf_inoc_scaffold_1062_curated_22
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23801..24475
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Paraprevotella clara CAG:116 RepID=R5N968_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCZ00313.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
hypothetical protein; K09789 hypothetical protein
SCNpilot_bf_inoc_scaffold_1062_curated_23
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24460..25224
DNA (765bp) protein (255aa)
Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581}; Short=Malonyl-ACP O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835};; EC=2.1.1.197 {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581};; Biotin synthesis protein BioC {ECO:0000256|HAMAP-Rule:MF_00835}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
biotin synthesis protein BioC; K02169 malonyl-CoA O-methyltransferase [EC:2.1.1.197]
Malonyl-[acyl-carrier protein] O-methyltransferase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CZM4_BACPM
SCNpilot_bf_inoc_scaffold_1062_curated_24
Bacteroides salanitronis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25214..25864
DNA (651bp) protein (217aa)
dethiobiotin synthetase (EC:6.3.3.3); K01935 dethiobiotin synthetase [EC:6.3.3.3]
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=667015 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78).;"
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Bacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78) RepID=F0R0Z1_BACSH
SCNpilot_bf_inoc_scaffold_1062_curated_25
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26028..26750
DNA (723bp) protein (241aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5ITT2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99466.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
SCNpilot_bf_inoc_scaffold_1062_curated_26
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26956..28101)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TE38_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEY83563.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
permease
SCNpilot_bf_inoc_scaffold_1062_curated_27
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28162..29469
DNA (1308bp) protein (436aa)
D-alanyl-D-alanine carboxypeptidase; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7ILU4_9BACE
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase {ECO:0000313|EMBL:EFI10321.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
Displaying 27 items

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