ggKbase home page

SCNpilot_bf_inoc_scaffold_532_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_532_curated_1
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17..2035
DNA (2019bp) protein (673aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F86DD
Uncharacterized protein {ECO:0000313|EMBL:EGK00269.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
Glycoside hydrolase 97.
SCNpilot_bf_inoc_scaffold_532_curated_2
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2078..3076)
DNA (999bp) protein (333aa)
AraC family transcriptional regulator n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037E8368
Uncharacterized protein {ECO:0000313|EMBL:EGK04422.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
AraC-type DNA-binding domain-containing proteins
SCNpilot_bf_inoc_scaffold_532_curated_3
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3294..4871
DNA (1578bp) protein (526aa)
sodium transporter n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035E0239
Uncharacterized protein {ECO:0000313|EMBL:EGK04423.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
SSS sodium solute transporter superfamily
SCNpilot_bf_inoc_scaffold_532_curated_4
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4924..5943
DNA (1020bp) protein (340aa)
glycosidase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000372E3C0
Uncharacterized protein {ECO:0000313|EMBL:EGK04424.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
Predicted glycosylase
SCNpilot_bf_inoc_scaffold_532_curated_5
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5990..9130
DNA (3141bp) protein (1047aa)
TonB-dependent receptor n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000363BA56
Outer membrane receptor proteins, mostly Fe transport
Outer membrane receptor proteins, mostly Fe transport {ECO:0000313|EMBL:CBK67271.1}; TaxID=657309 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens XB1A.;"
SCNpilot_bf_inoc_scaffold_532_curated_6
Bacteroides sp. D1, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9145..10683
DNA (1539bp) protein (513aa)
membrane protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000369653A
SusD family.
SusD family protein {ECO:0000313|EMBL:EEO48828.1}; TaxID=556258 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D1.;"
SCNpilot_bf_inoc_scaffold_532_curated_7
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10791..11750
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036423FB
Uncharacterized protein {ECO:0000313|EMBL:CDM07633.1}; TaxID=702447 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens SD CC 1b.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_532_curated_8
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11761..13224
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000372C458
Uncharacterized protein {ECO:0000313|EMBL:EGK04428.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_532_curated_9
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13230..14720
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000379A876
Uncharacterized protein {ECO:0000313|EMBL:EGK04429.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_532_curated_10
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14723..15916
DNA (1194bp) protein (398aa)
Beta-mannanase (EC:3.2.1.78)
mannase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00038203E6
Uncharacterized protein {ECO:0000313|EMBL:EGK04430.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
SCNpilot_bf_inoc_scaffold_532_curated_11
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15996..16406)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037FB31C
Uncharacterized protein {ECO:0000313|EMBL:CEA15695.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
SH3 type 3 domain-containing protein
SCNpilot_bf_inoc_scaffold_532_curated_12
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16413..16898)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003683FFE
Uncharacterized protein {ECO:0000313|EMBL:CEA15696.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
transport-associated
SCNpilot_bf_inoc_scaffold_532_curated_13
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17008..17964)
DNA (957bp) protein (319aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11 1.8.4.12); K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000363FAC5
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_532_curated_14
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18105..19523
DNA (1419bp) protein (473aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037A5801
SCNpilot_bf_inoc_scaffold_532_curated_15
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20002..20832)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036D5937
Signal transduction histidine kinase
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_532_curated_16
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21145..22230)
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037E0150
DNA-binding helix-turn-helix protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_532_curated_17
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


22560..23291
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003662559
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_532_curated_18
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23385..24497)
DNA (1113bp) protein (371aa)
4-phosphoerythronate dehydrogenase (EC:1.1.1.290); K03473 erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037CA607
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_532_curated_19
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24549..26021)
DNA (1473bp) protein (491aa)
NADPH-dependent glutamate synthase; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
dihydropyrimidine dehydrogenase subunit A n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003772B24
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_532_curated_20
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26109..26894)
DNA (786bp) protein (262aa)
Sulfide dehydrogenase subunit beta {ECO:0000313|EMBL:CEA15835.1}; EC=1.8.-.- {ECO:0000313|EMBL:CEA15835.1};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
sulfide dehydrogenase (flavoprotein) subunit sudb (EC:1.8.1.-); K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
ferredoxin-NADP(+) reductase subunit alpha n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000361965F
SCNpilot_bf_inoc_scaffold_532_curated_21
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27267..28445
DNA (1179bp) protein (393aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6AFX7_9PORP
Phage integrase family protein {ECO:0000313|EMBL:KDS73225.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
bacteriophage integrase
SCNpilot_bf_inoc_scaffold_532_curated_22
unknown

Not on your lists

28465..29283
DNA (819bp) protein (273aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_532_curated_23
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29442..29729
DNA (288bp) protein (96aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Bacteroides ovatus CL02T12C04 RepID=I9T439_BACOV
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:KKB59727.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
excisionase
SCNpilot_bf_inoc_scaffold_532_curated_24

Not on your lists

29732..30118
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Alistipes onderdonkii RepID=UPI0003722602
Uncultured bacterium extrachromosomal DNA RGI00249 {ECO:0000313|EMBL:CDL65836.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_bf_inoc_scaffold_532_curated_25
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30102..32516
DNA (2415bp) protein (805aa)
Virulence-associated E family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PV62_9CLOT
Virulence-associated E family protein {ECO:0000313|EMBL:EET86880.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
virulence-associated E domain-containing protein
SCNpilot_bf_inoc_scaffold_532_curated_26
unknown

Not on your lists

32773..33186
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_532_curated_27
unknown

Not on your lists

33213..33335
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_532_curated_28
unknown

Not on your lists

33367..34029
DNA (663bp) protein (221aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_532_curated_29
unknown

Not on your lists

34056..34304
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_532_curated_30
unknown

Not on your lists

34377..34646
DNA (270bp) protein (90aa)

This feature has no annotations

Displaying items 1-30 of 44 in total

View Taxonomy