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SCNpilot_bf_inoc_scaffold_1969_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1969_curated_1
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(232..675)
DNA (444bp) protein (148aa)
Uncharacterized protein n=4 Tax=Bacteroidales RepID=C7X9E2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEU50869.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
SCNpilot_bf_inoc_scaffold_1969_curated_2
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1325..1927)
DNA (603bp) protein (201aa)
MTH538 TIR-like domain (DUF1863) n=3 Tax=Bacteroidales RepID=D6D3A2_9BACE
MTH538 TIR-like domain (DUF1863).
MTH538 TIR-like domain (DUF1863) {ECO:0000313|EMBL:CBK68904.1}; TaxID=657309 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens XB1A.;"
SCNpilot_bf_inoc_scaffold_1969_curated_3
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1931..3886)
DNA (1956bp) protein (652aa)
TIR domain n=1 Tax=Bacteroides xylanisolvens XB1A RepID=D6D3A3_9BACE
TIR domain.
TIR domain {ECO:0000313|EMBL:CBK68905.1}; TaxID=657309 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens XB1A.;"
SCNpilot_bf_inoc_scaffold_1969_curated_4
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3903..4448)
DNA (546bp) protein (182aa)
MTH538 TIR-like domain (DUF1863) n=3 Tax=Bacteroidales RepID=D6D3A1_9BACE
MTH538 TIR-like domain (DUF1863).
Uncharacterized protein {ECO:0000313|EMBL:EEU50910.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
SCNpilot_bf_inoc_scaffold_1969_curated_5
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4890..5213)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7N7G3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EMQ94378.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1969_curated_6
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(5226..5789)
DNA (564bp) protein (188aa)
Uncharacterized protein n=2 Tax=Myroides RepID=K1IC51_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ43939.1}; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
MTH538 TIR-like domain (DUF1863).
SCNpilot_bf_inoc_scaffold_1969_curated_7
Bacteroides cellulosilyticus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6217..6504
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus CL02T12C19 RepID=I8WIG1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY37627.1}; TaxID=997874 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides cellulosilyticus CL02T12C19.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1969_curated_8
GWD2_Clostridiales_32_59_curated, Clostridiales, Bacteria

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6518..7057
DNA (540bp) protein (180aa)
id=1894715 bin=GWD2_Clostridiales_32_59 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65
Tax=GWD2_Clostridiales_32_59_curated
SCNpilot_bf_inoc_scaffold_1969_curated_9
unknown

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comp(7647..8243)
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1969_curated_10
unknown

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comp(8579..8857)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1969_curated_11
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9849..10799
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DA67_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB48432.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
outer membrane assembly protein
SCNpilot_bf_inoc_scaffold_1969_curated_12
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10803..11912)
DNA (1110bp) protein (370aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IYH6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK01611.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
ABC transporter membrane protein; K01992 ABC-2 type transport system permease protein
SCNpilot_bf_inoc_scaffold_1969_curated_13
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11914..13020)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IYH5_9PORP
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
ABC transporter; K09686 antibiotic transport system permease protein rbh
SCNpilot_bf_inoc_scaffold_1969_curated_14
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13022..13765)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_6 RepID=C6IH32_9BACE
ABC transporter {ECO:0000313|EMBL:GAK37663.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein rbh
SCNpilot_bf_inoc_scaffold_1969_curated_15
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13762..14676)
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WYS4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04097.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
ABC transporter
SCNpilot_bf_inoc_scaffold_1969_curated_16
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14676..15587)
DNA (912bp) protein (304aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IYG9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK01604.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
ABC transporter lipoprotein; K01993 HlyD family secretion protein
SCNpilot_bf_inoc_scaffold_1969_curated_17
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15602..16864)
DNA (1263bp) protein (421aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IYG8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK01603.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
outer membrane efflux protein
SCNpilot_bf_inoc_scaffold_1969_curated_18
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16890..17516)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5Y1D9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06872.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_1969_curated_19
Bacteroides pyogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(17605..18489)
DNA (885bp) protein (295aa)
Transcriptional regulator, AraC family n=1 Tax=Bacteroides pyogenes F0041 RepID=U2DVZ9_9BACE
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERI85822.1}; TaxID=1321819 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides pyogenes F0041.;"
AraC family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1969_curated_20
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18721..19644)
DNA (924bp) protein (308aa)
Glycosyl hydrolase, family 43 n=1 Tax=Bacteroides sp. 2_1_16 RepID=D1JJW2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKB48286.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
xylosidase/arabinosidase
SCNpilot_bf_inoc_scaffold_1969_curated_21
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19766..20971)
DNA (1206bp) protein (402aa)
L-serine dehydratase; K01752 L-serine dehydratase [EC:4.3.1.17]
L-serine ammonia-lyase n=3 Tax=Parabacteroides RepID=K5YF23_9PORP
L-serine ammonia-lyase {ECO:0000313|EMBL:EKN12147.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
SCNpilot_bf_inoc_scaffold_1969_curated_22
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20990..22126)
DNA (1137bp) protein (379aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=E1YVJ7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEY84559.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
transmembrane protein
SCNpilot_bf_inoc_scaffold_1969_curated_23
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22225..23682
DNA (1458bp) protein (486aa)
cobyric acid synthase; K02232 adenosylcobyric acid synthase [EC:6.3.5.10]
Cobyric acid synthase n=4 Tax=Parabacteroides RepID=COBQ_PARD8 rbh
Cobyric acid synthase {ECO:0000255|HAMAP-Rule:MF_00028}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
SCNpilot_bf_inoc_scaffold_1969_curated_24
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23767..24255)
DNA (489bp) protein (163aa)
Transcription termination/antitermination factor NusG n=3 Tax=Parabacteroides RepID=B7B9G7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX78463.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
transcription termination/antitermination factor NusG
SCNpilot_bf_inoc_scaffold_1969_curated_25
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24380..25702
DNA (1323bp) protein (441aa)
Putative NADH-dependent dyhydrogenase n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7J6E4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB48300.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
NADH-dependent dyhydrogenase
SCNpilot_bf_inoc_scaffold_1969_curated_26
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25997..26407)
DNA (411bp) protein (137aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418};; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
dapA2; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase n=3 Tax=Parabacteroides RepID=K5ZIH2_9PORP
Displaying 26 items

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