ggKbase home page

SCNpilot_bf_inoc_scaffold_1004_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1004_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60..1478)
DNA (1419bp) protein (473aa)
Amidohydrolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK4_ALIDB
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B
Amidohydrolase {ECO:0000313|EMBL:GAO24910.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_1004_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1491..2501)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK3_ALIDB
hypothetical protein
TctC protein {ECO:0000313|EMBL:GAO24909.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_1004_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2643..3641
DNA (999bp) protein (333aa)
Regulatory protein LysR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQK2_ALIDB
LysR family transcriptional regulator
Regulatory protein LysR {ECO:0000313|EMBL:ADV01357.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_1004_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3673..3954)
DNA (282bp) protein (94aa)
hypothetical protein id=12553925 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1004_curated_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4006..4329)
DNA (324bp) protein (108aa)
4Fe-4S ferredoxin n=1 Tax=Acidovorax sp. NO-1 RepID=H0C158_9BURK
4Fe-4S ferredoxin {ECO:0000313|EMBL:EHL21713.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
4Fe-4S ferredoxin; K05524 ferredoxin
SCNpilot_bf_inoc_scaffold_1004_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4386..5423
DNA (1038bp) protein (346aa)
cobalamin biosynthesis protein CobD; K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10] id=5081266 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
cobalamin biosynthesis protein CobD; K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_1004_curated_7
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5600..6661
DNA (1062bp) protein (354aa)
class I/II aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Aminotransferase {ECO:0000313|EMBL:ABM37455.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABM37455.1};; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Aminotransferase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VP77_POLNA
SCNpilot_bf_inoc_scaffold_1004_curated_8
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6658..8289
DNA (1632bp) protein (544aa)
cobyric acid synthase CobQ; K02232 adenosylcobyric acid synthase [EC:6.3.5.10]
Cobyric acid synthase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KV43_9BURK
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
SCNpilot_bf_inoc_scaffold_1004_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8295..9341
DNA (1047bp) protein (349aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036709FC
SCNpilot_bf_inoc_scaffold_1004_curated_10
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9389..10597
DNA (1209bp) protein (403aa)
Beta-lactamase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTA1_9BURK
Beta-lactamase {ECO:0000313|EMBL:EHL24381.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
beta-lactamase
SCNpilot_bf_inoc_scaffold_1004_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10612..11412
DNA (801bp) protein (267aa)
cobalamin-5-phosphate synthase CobS; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Cobalamin synthase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKN9_VARPS
SCNpilot_bf_inoc_scaffold_1004_curated_12
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11409..11966
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y654_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92740.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1004_curated_13
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11982..12659)
DNA (678bp) protein (226aa)
TenA family transcriptional regulator; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
TENA/THI-4/PQQC family protein 2 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SYQ5_ALCXX
TENA/THI-4/PQQC family protein 2 {ECO:0000313|EMBL:EGP46827.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
SCNpilot_bf_inoc_scaffold_1004_curated_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12781..13365
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV06_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV28005.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_bf_inoc_scaffold_1004_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13328..14167)
DNA (840bp) protein (280aa)
Alpha/beta hydrolase fold-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XE59_VARPD
alpha/beta hydrolase fold-containing protein
Alpha/beta hydrolase fold-containing protein {ECO:0000313|EMBL:AGU50791.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_1004_curated_16
unknown

Not on your lists

14254..14562
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1004_curated_17
CG_Mariprof_05, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14576..15034
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QC23_9ZZZZ
polyketide cyclase/dehydrase and lipid transport family protein 1
Tax=CG_Mariprof_05
SCNpilot_bf_inoc_scaffold_1004_curated_18
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15044..17608)
DNA (2565bp) protein (855aa)
DNA mismatch repair protein MutS n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4E0_RAMTT
mutS; DNA mismatch repair ATPase protein; K03555 DNA mismatch repair protein MutS
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1004_curated_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17769..18551
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003685823
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDM25688.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
major facilitator superfamily transporter
SCNpilot_bf_inoc_scaffold_1004_curated_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18518..18949
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003685823
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDM25688.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
major facilitator superfamily transporter
SCNpilot_bf_inoc_scaffold_1004_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18980..21211)
DNA (2232bp) protein (744aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2K305_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL74520.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1004_curated_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21255..22634)
DNA (1380bp) protein (460aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-]
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WH50_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37505.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_bf_inoc_scaffold_1004_curated_23
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22771..23277
DNA (507bp) protein (169aa)
Appr-1-p processing domain-containing protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1I0J5_PSEUO
Appr-1-p processing protein {ECO:0000313|EMBL:KES22158.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1004_curated_24
unknown

Not on your lists

23389..24015
DNA (627bp) protein (209aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1004_curated_25
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24193..26136
DNA (1944bp) protein (648aa)
aconitate hydratase (EC:4.2.1.3)
aconitate hydratase n=1 Tax=Acidovorax radicis RepID=UPI0002376649
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
Displaying 25 items

View Taxonomy