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SCNpilot_bf_inoc_scaffold_1315_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1315_curated_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(62..649)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000365FBC1
Phage integrase family protein {ECO:0000313|EMBL:BAR63339.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
integrase/recombinase
SCNpilot_bf_inoc_scaffold_1315_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(646..1572)
DNA (927bp) protein (309aa)
integrase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037DC5E1
phage integrase family protein
Site-specific recombinase XerD {ECO:0000313|EMBL:EJC82667.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
SCNpilot_bf_inoc_scaffold_1315_curated_3
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1569..2813)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000360EDFB
PUTATIVE INTEGRASE/RECOMBINASE PROTEIN {ECO:0000313|EMBL:CAD31628.1}; TaxID=381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (Mesorhizobium loti).;"
putative integrase/recombinase
SCNpilot_bf_inoc_scaffold_1315_curated_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3210..3800
DNA (591bp) protein (197aa)
hypothetical protein id=12553433 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24165.1}; Flags: Fragment;; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1315_curated_5
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3932..4726
DNA (795bp) protein (265aa)
enoyl-CoA hydratase/isomerase (EC:4.2.1.17)
Putative enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:CAP41465.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CAP41465.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Putative enoyl-CoA hydratase/isomerase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IBP4_BORPD
SCNpilot_bf_inoc_scaffold_1315_curated_6
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4828..5538
DNA (711bp) protein (237aa)
TetR family transcriptional regulator id=12553419 bin=BDI species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
TetR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1315_curated_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5619..6401)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IBK9_BORPD
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1315_curated_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6693..7667
DNA (975bp) protein (325aa)
alpha-methylacyl-CoA racemase; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4] id=12553429 bin=BDI species=Burkholderia cenocepacia genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
alpha-methylacyl-CoA racemase (EC:5.1.99.4); K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1315_curated_9
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7846..9084
DNA (1239bp) protein (413aa)
thiolase id=12553428 bin=BDI species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
thiolase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1315_curated_10
unknown

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comp(9167..9367)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1315_curated_11
unknown

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comp(9604..9756)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1315_curated_12
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9979..11130
DNA (1152bp) protein (384aa)
acyl-CoA dehydrogenase domain-containing protein id=12553421 bin=BDI species=Pseudomonas sp. G5(2012) genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
acyl-CoA dehydrogenase domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1315_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11165..12040
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036562DD
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL78979.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_bf_inoc_scaffold_1315_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12047..13123
DNA (1077bp) protein (359aa)
Inner-membrane translocator id=1270633 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_1315_curated_15
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13120..13953
DNA (834bp) protein (278aa)
High-affinity branched-chain amino acid transport ATP-binding protein livG {ECO:0000313|EMBL:EIK92085.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK92085.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
High-affinity branched-chain amino acid transport ATP-binding protein livG n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MS95_9BURK
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_1315_curated_16
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13967..14755
DNA (789bp) protein (263aa)
ABC transporter ATP-binding protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030C3668
ABC transporter-like protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_1315_curated_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14792..16651
DNA (1860bp) protein (620aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] id=5080541 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_1315_curated_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16680..17840
DNA (1161bp) protein (387aa)
Extracellular ligand-binding receptor id=1270637 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
putative ABC transporter, branched-chain amino acid-binding protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1315_curated_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17918..19102
DNA (1185bp) protein (395aa)
Thiolase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125R2_POLSJ
lipid-transfer protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1315_curated_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19151..19606
DNA (456bp) protein (152aa)
MaoC-like dehydratase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UI9_CUPPJ
acyl dehydratase MaoC
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1315_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19628..20533
DNA (906bp) protein (302aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YKT9_9BURK
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1315_curated_22
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20582..21784
DNA (1203bp) protein (401aa)
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UG9_CUPPJ
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region {ECO:0000313|EMBL:AAZ63215.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_bf_inoc_scaffold_1315_curated_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21816..22952
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-]
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UJ0_CUPPJ
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1315_curated_24
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23000..23827
DNA (828bp) protein (276aa)
paaG1; enoyl-CoA hydratase (EC:4.2.1.17); K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Putative enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NCI8_RHOPA
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying 24 items

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