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SCNpilot_bf_inoc_scaffold_1868_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1868_curated_1
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(186..914)
DNA (729bp) protein (243aa)
monofunctional peptidoglycan glycosyltransferase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|SAAS:SAAS00055690}; EC=2.4.-.- {ECO:0000256|SAAS:SAAS00279069};; EC=2.4.2.- {ECO:0000256|SAAS:SAAS00055699};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Candidate monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51 n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZP1_RAMTT
SCNpilot_bf_inoc_scaffold_1868_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1154..2050)
DNA (897bp) protein (299aa)
TonB family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR47_ALIDB
tonb family protein; K03832 periplasmic protein TonB
TonB family protein {ECO:0000313|EMBL:ADV01398.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_1868_curated_3
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2050..4113)
DNA (2064bp) protein (688aa)
Ribonuclease II n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9D9_ACIDE
Ribonuclease II {ECO:0000313|EMBL:EER58905.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
ribonuclease II
SCNpilot_bf_inoc_scaffold_1868_curated_4
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4178..4771)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TBW9_ACIDE
hypothetical protein; K07000
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1868_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4815..5972
DNA (1158bp) protein (386aa)
cell wall shape-determining protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036F4369
Rod shape-determining protein roda {ECO:0000313|EMBL:GAD23808.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
rod shape-determining protein roda; K05837 rod shape determining protein RodA
SCNpilot_bf_inoc_scaffold_1868_curated_6
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6104..6445
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI0003739A05
hypothetical protein; K09946 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE43044.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_1868_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6533..7693)
DNA (1161bp) protein (387aa)
extracellular ligand-binding receptor id=12552489 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1868_curated_8
Anoxybacillus thermarum, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7883..9148)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036F9DEF
Anoxybacillus thermarum strain AF/04 contig000005, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ95489.1}; TaxID=404937 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus thermarum.;"
major facilitator superfamily permease; K08369 MFS transporter, putative metabolite:H+ symporter
SCNpilot_bf_inoc_scaffold_1868_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9225..10736
DNA (1512bp) protein (504aa)
DNA repair protein radA n=2 Tax=Alicycliphilus denitrificans RepID=E8TTX1_ALIDB
DNA repair protein rada; K04485 DNA repair protein RadA/Sms
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_1868_curated_10
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11066..11488
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000365B3C7
Uncharacterized protein {ECO:0000313|EMBL:EGI77023.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1868_curated_11
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11558..12490
DNA (933bp) protein (311aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HTS6_9BURK
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1868_curated_12
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12507..12716
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q3K3_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44245.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_1868_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12761..13975)
DNA (1215bp) protein (405aa)
polymerase n=1 Tax=Variovorax paradoxus RepID=UPI00037794A2
O-antigen polymerase
O-antigen polymerase {ECO:0000313|EMBL:ACS16920.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_1868_curated_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14230..15516)
DNA (1287bp) protein (429aa)
Histidine kinase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXB7_VARPS
histidine kinase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1868_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15685..16392)
DNA (708bp) protein (236aa)
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8TUL9_ALIDB
response regulator receiver
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEB82691.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_1868_curated_16
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16862..18220)
DNA (1359bp) protein (453aa)
UPI0003D67D24 related cluster n=1 Tax=unknown RepID=UPI0003D67D24
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit-related amidase {ECO:0000313|EMBL:AIY40950.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
SCNpilot_bf_inoc_scaffold_1868_curated_17
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18340..19098
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000377472E
UPF0271 protein AX13_07890 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
lamb/ycsf family protein; K07160 UPF0271 protein
SCNpilot_bf_inoc_scaffold_1868_curated_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19103..20743
DNA (1641bp) protein (547aa)
urea amidolyase-like protein (EC:6.3.4.6)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037BE4BC
Allophanate hydrolase subunit 2 {ECO:0000313|EMBL:GAD23819.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_bf_inoc_scaffold_1868_curated_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20791..22533
DNA (1743bp) protein (581aa)
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
N-6 DNA methylase n=1 Tax=Comamonas testosteroni S44 RepID=D8D6J1_COMTE
N-6 DNA methylase {ECO:0000313|EMBL:EFI61444.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
SCNpilot_bf_inoc_scaffold_1868_curated_20
unknown

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22530..22748
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1868_curated_21
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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23298..23570
DNA (273bp) protein (91aa)
restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Restriction modification system DNA specificity domain n=1 Tax=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) RepID=A1VAP4_DESVV
Type-1 restriction enzyme EcoKI specificity protein {ECO:0000313|EMBL:GAO33453.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
Displaying 21 items

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