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SCNpilot_bf_inoc_scaffold_1972_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1972_curated_1
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..2368
DNA (2367bp) protein (789aa)
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK09_9BURK
heavy metal efflux pump, cobalt-zinc-cadmium
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_1972_curated_2
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2361..2663
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK08_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70980.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Protein of unknown function (DUF3240)
SCNpilot_bf_inoc_scaffold_1972_curated_3
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3232..3834
DNA (603bp) protein (201aa)
Outer membrane protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK07_9BURK
outer membrane protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_1972_curated_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4100..4747
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDV4_PSEAI
Membrane protein {ECO:0000313|EMBL:ETD48020.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1972_curated_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4770..5408
DNA (639bp) protein (213aa)
Uncharacterized protein n=15 Tax=Pseudomonas aeruginosa RepID=U1FJ24_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETD48021.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1972_curated_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5534..5794
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WJA2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETD48022.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
SCNpilot_bf_inoc_scaffold_1972_curated_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6375..7154)
DNA (780bp) protein (260aa)
IstB domain protein ATP-binding protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAA7_ACISJ
ATP-binding domain-containing protein IstB
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:ABM43182.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_1972_curated_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7147..8658)
DNA (1512bp) protein (504aa)
Integrase, catalytic region n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAA8_ACISJ
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABM43183.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_1972_curated_9
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8839..9594
DNA (756bp) protein (252aa)
Copper resistance protein B n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WXH0_DELAC
copper resistance protein B domain-containing protein; K07233 copper resistance protein B
Copper resistance protein B domain protein {ECO:0000313|EMBL:ADP14468.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_bf_inoc_scaffold_1972_curated_10
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9618..10103
DNA (486bp) protein (162aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8HDI4_PSEAI
hypothetical protein
Metal-binding protein {ECO:0000313|EMBL:KEH14952.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_bf_inoc_scaffold_1972_curated_11
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10135..10419
DNA (285bp) protein (95aa)
Asl7591 protein n=17 Tax=Proteobacteria RepID=I0KLV5_STEMA
Asl7591 protein
Uncharacterized protein {ECO:0000313|EMBL:EFF76940.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
SCNpilot_bf_inoc_scaffold_1972_curated_12
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10802..11122)
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZ21_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22393.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
SCNpilot_bf_inoc_scaffold_1972_curated_13
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11162..11614)
DNA (453bp) protein (151aa)
KLTH0D05698p n=1 Tax=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) RepID=C5DGJ0_LACTC id=5225052 bin=16ft_combo_ws3_JS1 species=Lachancea thermotolerans genus=Lachancea taxon_order=Saccharomycetales taxon_class=Saccharomycetes phylum=Ascomycota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Uncharacterized protein {ECO:0000313|EMBL:EWS65297.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_bf_inoc_scaffold_1972_curated_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11738..12841
DNA (1104bp) protein (368aa)
copper-translocating P-type ATPase 2 (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-transporting P-type ATPase n=8 Tax=Proteobacteria RepID=V8EX86_PSEAI
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EJP76702.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
SCNpilot_bf_inoc_scaffold_1972_curated_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13066..13365
DNA (300bp) protein (100aa)
Copper resistance protein CopC n=2 Tax=Comamonas testosteroni RepID=D0IY05_COMT2
copper resistance protein CopC; K07156
Copper resistance protein CopC {ECO:0000313|EMBL:ACY33249.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
SCNpilot_bf_inoc_scaffold_1972_curated_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14335..14619
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XZG8_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD44919.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1972_curated_17
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14839..15729
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3H8_ACIDE
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EER60974.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
LysR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1972_curated_18
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15753..15887)
DNA (135bp) protein (45aa)
Uncharacterized HTH-type transcriptional regulator ydcN n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7K7W4_PSEPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETE31718.1}; TaxID=1214121 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa 32.;"
SCNpilot_bf_inoc_scaffold_1972_curated_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16470..16730
DNA (261bp) protein (87aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas aeruginosa VRFPA06 RepID=V8GM01_PSEAI
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM41561.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_1972_curated_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16784..17890)
DNA (1107bp) protein (369aa)
Integrase n=3 Tax=Pseudomonas aeruginosa RepID=U5AKF3_PSEAI
Integrase {ECO:0000313|EMBL:CDM23708.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
phage-related integrase
SCNpilot_bf_inoc_scaffold_1972_curated_21
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17930..18727)
DNA (798bp) protein (266aa)
Integrase n=1 Tax=Xylella fastidiosa 6c RepID=V8KB55_XYLFS
phage-related integrase
Phage-related integrase {ECO:0000313|EMBL:AAF84527.1}; TaxID=160492 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa (strain 9a5c).;"
SCNpilot_bf_inoc_scaffold_1972_curated_22
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19106..21541)
DNA (2436bp) protein (812aa)
lonA; ATP-dependent LA protease; K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Lon protease n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5H5_RAMTT
SCNpilot_bf_inoc_scaffold_1972_curated_23
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21732..22997)
DNA (1266bp) protein (422aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5H4_RAMTT
clpX; ATP-dependent Clp protease ATP-binding subunit; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1972_curated_24
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23064..23675)
DNA (612bp) protein (204aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
clpP; ATP-dependent clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Acidovorax sp. CF316 RepID=J0KLI0_9BURK
SCNpilot_bf_inoc_scaffold_1972_curated_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23854..25164)
DNA (1311bp) protein (437aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Trigger factor n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GEQ5_ALIDK
Trigger factor; K03545 trigger factor
SCNpilot_bf_inoc_scaffold_1972_curated_26
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25464..26333
DNA (870bp) protein (290aa)
Squalene synthase HpnC n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MG10_ACIET
squalene synthase hpnc
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1972_curated_27
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26344..27186
DNA (843bp) protein (281aa)
phytoene synthase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395BC5B
Phytoene synthase {ECO:0000313|EMBL:EXU79510.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
squalene/phytoene synthase
SCNpilot_bf_inoc_scaffold_1972_curated_28
unknown

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comp(27102..27320)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1972_curated_29
unknown

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comp(27342..28115)
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1972_curated_30
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28756..30657
DNA (1902bp) protein (634aa)
gaf sensor signal transduction histidine kinase; K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
GAF sensor signal transduction histidine kinase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBY7_ACIET
Displaying items 1-30 of 42 in total

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