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SCNpilot_bf_inoc_scaffold_1057_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1057_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..179
DNA (177bp) protein (59aa)
aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase 1 n=2 Tax=Comamonas testosteroni RepID=B7X0K9_COMTE
Aconitate hydratase 1 {ECO:0000313|EMBL:EED66359.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
SCNpilot_bf_inoc_scaffold_1057_curated_2
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..871
DNA (615bp) protein (205aa)
Amino acid transporter n=1 Tax=Rhodobacter capsulatus YW1 RepID=V8H0W3_RHOCA
Amino acid transporter {ECO:0000313|EMBL:ETE54658.1}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus Y262.;"
hypothetical protein; K06895 L-lysine exporter family protein LysE/ArgO
SCNpilot_bf_inoc_scaffold_1057_curated_3
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1004..2209
DNA (1206bp) protein (402aa)
FAD dependent oxidoreductase; K00480 salicylate hydroxylase [EC:1.14.13.1]
FAD dependent oxidoreductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDW2_ALIDK
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_bf_inoc_scaffold_1057_curated_4
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2232..3302)
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031AD3DF
Alpha/beta hydrolase {ECO:0000313|EMBL:EWY38298.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
patatin; K07001 NTE family protein
SCNpilot_bf_inoc_scaffold_1057_curated_5
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3391..3981)
DNA (591bp) protein (197aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|SAAS:SAAS00064138};; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
Trp repressor binding protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QF34_9RHOB
flavodoxin/nitric oxide synthase; K03809 Trp repressor binding protein
SCNpilot_bf_inoc_scaffold_1057_curated_6
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4108..5037
DNA (930bp) protein (310aa)
LysR family transcriptional regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GSN4_PUSST
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AEC19626.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_bf_inoc_scaffold_1057_curated_7
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5096..6094
DNA (999bp) protein (333aa)
tkrA; 2-ketogluconate reductase; K00090 gluconate 2-dehydrogenase [EC:1.1.1.215]
Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase) n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1X4_RAMTT
Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase) {ECO:0000313|EMBL:AEG93558.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1057_curated_8
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6164..7672
DNA (1509bp) protein (503aa)
Uncharacterized protein id=1262265 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein; K09760 DNA recombination protein RmuC
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_1057_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7758..8951
DNA (1194bp) protein (398aa)
Arabinose efflux permease family protein n=1 Tax=Variovorax sp. CF313 RepID=J2KX98_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL77628.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
major facilitator superfamily protein
SCNpilot_bf_inoc_scaffold_1057_curated_10
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8964..9422)
DNA (459bp) protein (153aa)
L-PSP family endoribonuclease n=1 Tax=Caldimonas manganoxidans RepID=UPI00037A9B81
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG93649.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1057_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9648..12113
DNA (2466bp) protein (822aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U269_ALIDB
DNA internalization-related competence protein comec/rec2; K02238 competence protein ComEC
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:ADU98873.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_1057_curated_12
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12110..12601
DNA (492bp) protein (164aa)
flavodoxin n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000360A9AB
flavodoxin
Flavodoxin {ECO:0000313|EMBL:AEI79857.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_bf_inoc_scaffold_1057_curated_13
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12607..13707)
DNA (1101bp) protein (367aa)
Lytic murein transglycosylase B n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9W1_ACIDE
Lytic murein transglycosylase B {ECO:0000313|EMBL:EER58731.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
lytic murein transglycosylase b
SCNpilot_bf_inoc_scaffold_1057_curated_14
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13682..15754)
DNA (2073bp) protein (691aa)
Transglutaminase domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLK4_POLNA
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ABM36532.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_bf_inoc_scaffold_1057_curated_15
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15751..16737)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y2S5_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG93621.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1057_curated_16
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16878..17561)
DNA (684bp) protein (228aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-]
ATPase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1A2_9BURK
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1057_curated_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17809..18762
DNA (954bp) protein (318aa)
deacetylase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002EE9C4B
histone deacetylase superfamily
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1057_curated_18
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18885..19694
DNA (810bp) protein (270aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CDS54107.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CDS54107.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030D5020
enoyl-CoA hydratase/isomerase
SCNpilot_bf_inoc_scaffold_1057_curated_19
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19651..20361)
DNA (711bp) protein (237aa)
UPI0003C86440 related cluster n=1 Tax=unknown RepID=UPI0003C86440
Uncharacterized protein {ECO:0000313|EMBL:EWS62746.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1057_curated_20
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20561..20983
DNA (423bp) protein (141aa)
Mechanosensitive ion channel protein MscS n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2E4_9BURK
mechanosensitive ion channel protein MscS
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:AFU47152.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_1057_curated_21
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21138..21887
DNA (750bp) protein (250aa)
electron transfer flavoprotein subunit beta n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036F7FCC
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1057_curated_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21991..22920
DNA (930bp) protein (310aa)
Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit) n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y2S0_RAMTT
electron transfer flavoprotein alpha-subunit; K03522 electron transfer flavoprotein alpha subunit
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1057_curated_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23031..23405
DNA (375bp) protein (125aa)
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-]
Acyl-CoA dehydrogenase domain-containing protein id=1262083 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=GWE1_Burkholderiales_65_30_curated
Displaying 23 items

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