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SCNpilot_bf_inoc_scaffold_1592_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1592_curated_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1473
DNA (1473bp) protein (491aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036F6B1E
ribonuclease
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1592_curated_2
Neisseria shayeganii, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1550..2434
DNA (885bp) protein (295aa)
Cell wall endopeptidase, family M23/M37 {ECO:0000313|EMBL:EGY53753.1}; EC=3.4.24.75 {ECO:0000313|EMBL:EGY53753.1};; TaxID=1032488 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria shayeganii 871.;"
Cell wall endopeptidase, family M23/M37 n=1 Tax=Neisseria shayeganii 871 RepID=G4CEM5_9NEIS
peptidase M23B
SCNpilot_bf_inoc_scaffold_1592_curated_3
Eikenella corrodens, Eikenella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2441..2875
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Eikenella corrodens CC92I RepID=V7IDJ1_EIKCO
Uncharacterized protein {ECO:0000313|EMBL:ETA82927.1}; TaxID=1073362 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Eikenella.;" source="Eikenella corrodens CC92I.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1592_curated_4
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3137..3706
DNA (570bp) protein (190aa)
ahpC; alkyl hydroperoxide reductase; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Alkyl hydroperoxide reductase subunit C n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6STV3_JANMA
Alkyl hydroperoxide reductase subunit C {ECO:0000313|EMBL:ABR89709.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_bf_inoc_scaffold_1592_curated_5
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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3958..5547
DNA (1590bp) protein (530aa)
Alkyl hydroperoxide reductase, F52a subunit,FAD/NAD(P)-binding {ECO:0000313|EMBL:CDI03264.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CDI03264.1};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
FAD-dependent pyridine nucleotide-disulfide; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-]
Alkyl hydroperoxide reductase, F subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAP7_ACIDE
SCNpilot_bf_inoc_scaffold_1592_curated_6
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5616..6467)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00038120B8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM38302.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_bf_inoc_scaffold_1592_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6522..8075)
DNA (1554bp) protein (518aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E08F2
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
virulence factor; K03980 virulence factor
SCNpilot_bf_inoc_scaffold_1592_curated_8
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8371..8676
DNA (306bp) protein (102aa)
30S ribosomal protein S20 n=2 Tax=Acidovorax RepID=RS20_ACIAC
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_1592_curated_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8798..10300)
DNA (1503bp) protein (501aa)
RND efflux system outer membrane lipoprotein NodT n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ61_THIDA
RND efflux system outer membrane lipoprotein NodT
RND efflux system outer membrane lipoprotein NodT {ECO:0000313|EMBL:AAZ97309.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_bf_inoc_scaffold_1592_curated_10
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10287..10748)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2C3K2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ENO98802.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1592_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10943..11671)
DNA (729bp) protein (243aa)
Phosphonate-transporting ATPase {ECO:0000313|EMBL:AEB84687.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEB84687.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZY5_ALIDB
ABC transporter; K02003 putative ABC transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_1592_curated_12

Not on your lists

comp(11658..11939)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DI00_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD97031.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ABC transporter permease; K02004 putative ABC transport system permease protein
SCNpilot_bf_inoc_scaffold_1592_curated_13
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12778..13929)
DNA (1152bp) protein (384aa)
HlyD family secretion protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPG7_9GAMM
HlyD family secretion protein
HlyD family secretion protein {ECO:0000313|EMBL:CBL46709.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_bf_inoc_scaffold_1592_curated_14
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13926..14513)
DNA (588bp) protein (196aa)
TetR family transcriptional regulator n=1 Tax=Thauera terpenica 58Eu RepID=S9ZDN9_9RHOO
TetR family transcriptional regulator {ECO:0000313|EMBL:EPZ15410.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
TetR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1592_curated_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14752..16170)
DNA (1419bp) protein (473aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD61_ACISJ
integral membrane sensor signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_1592_curated_16
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16167..16841)
DNA (675bp) protein (225aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIC0_ACIET
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACM34858.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_1592_curated_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16841..17173)
DNA (333bp) protein (111aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIC1_ACIET
propeptide pepsy amd peptidase m4
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:ACM34859.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_1592_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17263..17586
DNA (324bp) protein (108aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM0_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21106.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_1592_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17898..18098
DNA (201bp) protein (67aa)
Cytochrome b/b6 domain protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTZ4_9GAMM
Cytochrome b/b6 domain protein {ECO:0000313|EMBL:EIM02936.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_bf_inoc_scaffold_1592_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18150..18557
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F858D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00596.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_1592_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18584..19063
DNA (480bp) protein (160aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV02033.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_1592_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19085..21301
DNA (2217bp) protein (739aa)
oxidoreductase FAD/NAD(P)-binding domain-containing protein; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] id=5080007 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
oxidoreductase FAD/NAD(P)-binding domain-containing protein; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_1592_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21345..22271
DNA (927bp) protein (309aa)
thiamine biosynthesis lipoprotein ApbE n=1 Tax=Thiobacillus thioparus RepID=UPI00036DFBF6
apbe family lipoprotein; K03734 thiamine biosynthesis lipoprotein
Apbe family lipoprotein {ECO:0000313|EMBL:GAO25632.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_1592_curated_24
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22407..22622
DNA (216bp) protein (72aa)
Heavy metal transport/detoxification protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P4I8_9RHIZ
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:EKF42286.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
heavy metal transport/detoxification protein
SCNpilot_bf_inoc_scaffold_1592_curated_25
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22692..24662
DNA (1971bp) protein (657aa)
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0APS3_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ14854.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
SCNpilot_bf_inoc_scaffold_1592_curated_26
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24694..25440
DNA (747bp) protein (249aa)
Transcriptional regulator, Crp/Fnr family protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JD75_9ALTE
Transcriptional regulator, Crp/Fnr family protein {ECO:0000313|EMBL:EAZ99702.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
transcriptional regulator, Crp/Fnr family
SCNpilot_bf_inoc_scaffold_1592_curated_27
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25622..26128
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEB2_GALCS
Uncharacterized protein {ECO:0000313|EMBL:EWS62144.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1592_curated_28
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26118..26795
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MID1_ACIET
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_bf_inoc_scaffold_1592_curated_29
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26792..27472
DNA (681bp) protein (227aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MID2_ACIET
cAMP regulatory protein {ECO:0000313|EMBL:EWS62141.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
Crp/Fnr family transcriptional regulator
Displaying 29 items

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