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SCNpilot_bf_inoc_scaffold_635_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_635_curated_1
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..3048)
DNA (3048bp) protein (1016aa)
DNA polymerase III, alpha subunit n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPE7_9BURK
DNA polymerase III subunit alpha
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_635_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3140..3586)
DNA (447bp) protein (149aa)
DoxX family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYA5_VARPE
Variovorax paradoxus strain MEDvA23 contig_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30518.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
doxx family protein; K15977 putative oxidoreductase
SCNpilot_bf_inoc_scaffold_635_curated_3
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3725..4426)
DNA (702bp) protein (234aa)
Pirin domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRU5_ALIDB
Pirin domain-containing protein; K06911
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_635_curated_4
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4576..5469
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VRF3_POLNA
LysR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_bf_inoc_scaffold_635_curated_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5479..6546
DNA (1068bp) protein (356aa)
FAD dependent oxidoreductase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TRL0_ACIAC
FAD dependent oxidoreductase; K06955
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABM33598.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_635_curated_6
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6669..7634
DNA (966bp) protein (322aa)
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9X4_9BURK
glutamate--tRNA ligase
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_bf_inoc_scaffold_635_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7801..8586)
DNA (786bp) protein (262aa)
UBA/THIF-type NAD/FAD binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUY6_ALIDB
uba/thif-type nad/fad binding protein
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:AEB85520.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_635_curated_8
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8583..9701)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000371856A
hypothetical protein; K07112
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_635_curated_9
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9957..12806
DNA (2850bp) protein (950aa)
valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Valine--tRNA ligase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNN8_ACIAC
SCNpilot_bf_inoc_scaffold_635_curated_10
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12847..13812)
DNA (966bp) protein (322aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase (Phosphoglycerate dehydrogenase)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXC1_RAMTT
D-3-phosphoglycerate dehydrogenase (Phosphoglycerate dehydrogenase)-like protein {ECO:0000313|EMBL:AEG94256.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_635_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13916..14803
DNA (888bp) protein (296aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Acidovorax radicis RepID=UPI00023782AE
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_635_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14810..16198)
DNA (1389bp) protein (463aa)
Putative transporter-like membrane protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK07_9BURK
Putative transporter-like membrane protein {ECO:0000313|EMBL:EIK89547.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
MATE efflux family protein
SCNpilot_bf_inoc_scaffold_635_curated_13
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16257..16751)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U0ZVR6_9NEIS
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_bf_inoc_scaffold_635_curated_14
Pseudomonas sp. FH1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16742..17362)
DNA (621bp) protein (207aa)
Uncharacterized protein {ECO:0000313|EMBL:ETK24141.1}; TaxID=1284392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH1.;"
Uncharacterized protein id=1270028 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein; K09965 hypothetical protein
SCNpilot_bf_inoc_scaffold_635_curated_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17504..17731)
DNA (228bp) protein (76aa)
sira family protein id=12551028 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
SirA family protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_635_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17746..18294)
DNA (549bp) protein (183aa)
ADP-ribose pyrophosphatase n=1 Tax=Variovorax paradoxus RepID=UPI0003719E09
nudix hydrolase
Zn-finger containing NTP pyrophosphohydrolase {ECO:0000313|EMBL:EJL78061.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_bf_inoc_scaffold_635_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18365..19267)
DNA (903bp) protein (301aa)
cysteine synthase b; K12339 cysteine synthase B [EC:2.5.1.47]
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Cysteine synthase B n=2 Tax=Alicycliphilus denitrificans RepID=E8TV23_ALIDB
SCNpilot_bf_inoc_scaffold_635_curated_18
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19457..20722)
DNA (1266bp) protein (422aa)
acyl-CoA dehydrogenase-like protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUM5_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_bf_inoc_scaffold_635_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21063..22034)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000381BE6C
SAM-dependent methyltransferases {ECO:0000313|EMBL:GAD21583.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_635_curated_20
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22140..23060)
DNA (921bp) protein (307aa)
NAD(P)-bidning domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X7M1_VARPD
NAD(P)-bidning domain-containing protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_635_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23110..24153
DNA (1044bp) protein (348aa)
CDP-6-deoxy-delta-3,4-glucoseen reductase; K00523 CDP-4-dehydro-6-deoxyglucose reductase [EC:1.17.1.1]
CDP-6-deoxy-delta-3,4-glucoseen reductase n=1 Tax=Variovorax paradoxus RepID=UPI00037580B6
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ACS17944.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_635_curated_22
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24243..25208
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSE7_ALIDB
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYC50759.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_635_curated_23
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25273..25989)
DNA (717bp) protein (239aa)
Candidate ABC type branched chain amino acid transport systems, ATP-binding component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXD4_RAMTT
branched chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_635_curated_24
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25991..26764)
DNA (774bp) protein (258aa)
ABC transporter n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00037CC431
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACM34145.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_635_curated_25
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26786..27973)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037B035A
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJA11831.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_bf_inoc_scaffold_635_curated_26
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27993..28922)
DNA (930bp) protein (310aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=2 Tax=Acidovorax RepID=A1WB61_ACISJ
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ACM34147.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_635_curated_27
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29153..30355)
DNA (1203bp) protein (401aa)
Recombination factor protein RarA n=1 Tax=Acidovorax sp. NO-1 RepID=H0BY34_9BURK
recombination factor protein RarA
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_635_curated_28
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30741..30941
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI000377C8F2
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEM48395.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
Displaying 28 items

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