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SCNpilot_bf_inoc_scaffold_1280_curated

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1280_curated_1
Halomonas sp. SK1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..318
DNA (318bp) protein (106aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=168806 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. SK1.;"
catalase n=1 Tax=Brachymonas chironomi RepID=UPI0003703CA7
hypothetical protein
SCNpilot_bf_inoc_scaffold_1280_curated_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

411..893
DNA (483bp) protein (161aa)
Ferritin, Dps family protein n=2 Tax=Acidovorax RepID=A1W305_ACISJ
Ferritin, Dps family protein; K04047 starvation-inducible DNA-binding protein
Ferritin Dps family protein {ECO:0000313|EMBL:ACM31853.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_1280_curated_3
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1081..1731)
DNA (651bp) protein (217aa)
Transcriptional regulator, TetR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TB77_ACIDE
acrR; transcriptional regulator AcrR; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_1280_curated_4
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1964..3247
DNA (1284bp) protein (428aa)
membrane protein n=1 Tax=Comamonas sp. B-9 RepID=UPI0003954E52
RND family efflux transporter MFP subunit; K03585 membrane fusion protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_1280_curated_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3260..6514
DNA (3255bp) protein (1085aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAS9_ACIDE
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:EER58419.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hydrophobe/amphiphile efflux-1 (HAE1) family protein
SCNpilot_bf_inoc_scaffold_1280_curated_6
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6511..8019
DNA (1509bp) protein (503aa)
RND efflux system, outer membrane lipoprotein, NodT family (Fragment) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAS8_ACIDE
RND efflux system outer membrane lipoprotein NodT
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1280_curated_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8142..9017
DNA (876bp) protein (292aa)
Cytochrome c, class I n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJ54_ACIAC
class I cytochrome c
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1280_curated_8
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9146..9688)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00035F48E0
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1280_curated_9
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10257..10703)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5D8_RAMTT
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1280_curated_10
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10850..11473
DNA (624bp) protein (208aa)
LemA family protein n=1 Tax=Variovorax paradoxus RepID=UPI0003620BD9
recA; recombinase A; K03744 LemA protein
Tax=CG_Rhodof_03
SCNpilot_bf_inoc_scaffold_1280_curated_11
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11511..12434
DNA (924bp) protein (308aa)
Candidate membrane protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5D5_RAMTT
membrane protein; K06872 uncharacterized protein
Candidate membrane protein {ECO:0000313|EMBL:AEG91445.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1280_curated_12
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12437..12976
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GP8_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE42294.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_1280_curated_13
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13011..13619)
DNA (609bp) protein (203aa)
Cyclic nucleotide-binding domain-containing protein id=1278700 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
cyclic nucleotide-binding domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1280_curated_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13733..14152)
DNA (420bp) protein (140aa)
atpC; F0F1 ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=2 Tax=Acidovorax RepID=ATPE_ACIET
ATP synthase epsilon chain {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_1280_curated_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14248..14847)
DNA (600bp) protein (200aa)
F0F1 ATP synthase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
F0F1 ATP synthase subunit beta n=1 Tax=Brachymonas chironomi RepID=UPI00037BC7BB
SCNpilot_bf_inoc_scaffold_1280_curated_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15630..16508)
DNA (879bp) protein (293aa)
F0F1 ATP synthase subunit gamma (EC:3.6.3.15); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
F0F1 ATP synthase subunit gamma n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036A21BB
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_bf_inoc_scaffold_1280_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16535..18148)
DNA (1614bp) protein (538aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.15); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha n=1 Tax=Variovorax sp. CF313 RepID=J3CTN1_9BURK
SCNpilot_bf_inoc_scaffold_1280_curated_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18199..18729)
DNA (531bp) protein (177aa)
atpH; ATP synthase, subunit delta (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJP4_9BURK
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_bf_inoc_scaffold_1280_curated_19
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18762..19232)
DNA (471bp) protein (157aa)
F0F1 ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KQP9_9BURK
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
SCNpilot_bf_inoc_scaffold_1280_curated_20
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19269..19517)
DNA (249bp) protein (83aa)
F-ATPase, C chain; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
F0F1 ATP synthase subunit C n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KQP8_9BURK
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1280_curated_21
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19576..20454)
DNA (879bp) protein (293aa)
F-ATPase, A chain; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
ATP synthase subunit a n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5B6_RAMTT
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1280_curated_22
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20458..21003)
DNA (546bp) protein (182aa)
ATP synthase subunit I n=1 Tax=Acidovorax avenae RepID=UPI00036A5DB5
putative ATP synthase protein I; K02116 ATP synthase protein I
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1280_curated_23
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21164..22072
DNA (909bp) protein (303aa)
branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase (EC:2.6.1.-); K00824 D-alanine transaminase [EC:2.6.1.21]
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase {ECO:0000313|EMBL:ABE42282.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABE42282.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GR0_POLSJ
SCNpilot_bf_inoc_scaffold_1280_curated_24
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22069..22353
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036DE2D4
UPF0250 protein AZ34_00530 {ECO:0000256|HAMAP-Rule:MF_00659}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1280_curated_25
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22438..24096
DNA (1659bp) protein (553aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD74_ACISJ
DNA methylase N-4/N-6 domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_bf_inoc_scaffold_1280_curated_26
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

24101..24913
DNA (813bp) protein (271aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ76427.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
Putative uncharacterized protein id=4578307 bin=GWF2_Lentisphaerae_57_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
SCNpilot_bf_inoc_scaffold_1280_curated_27
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25103..27793
DNA (2691bp) protein (897aa)
Type III restriction enzyme, res subunit n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD73_ACISJ
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:KJA11702.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
type III restriction enzyme, res subunit
SCNpilot_bf_inoc_scaffold_1280_curated_28
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27790..28488
DNA (699bp) protein (233aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source=
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJQ1_9BURK
SCNpilot_bf_inoc_scaffold_1280_curated_29
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28614..29588
DNA (975bp) protein (325aa)
MFS transporter n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QXZ3_RALPI
MFS transporter {ECO:0000313|EMBL:AGW95784.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1280_curated_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29817..30677
DNA (861bp) protein (287aa)
membrane protein id=5083508 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying items 1-30 of 55 in total

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