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SCNpilot_bf_inoc_scaffold_833_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_833_curated_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..119)
DNA (117bp) protein (39aa)
thioesterase superfamily protein id=12550089 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
thioesterase superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_833_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

351..2387
DNA (2037bp) protein (679aa)
Transketolase {ECO:0000313|EMBL:AEB86813.1}; EC=2.2.1.1 {ECO:0000313|EMBL:AEB86813.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW97_ALIDB
SCNpilot_bf_inoc_scaffold_833_curated_3
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2574..3572
DNA (999bp) protein (333aa)
cbbG2; glyceraldehyde-3-phosphate dehydrogenase A (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI000304EF89
SCNpilot_bf_inoc_scaffold_833_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3640..3948)
DNA (309bp) protein (103aa)
antibiotic biosynthesis monooxygenase n=1 Tax=Variovorax paradoxus RepID=UPI00037AEB67
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35745.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative antibiotic biosynthesis monooxygenase
SCNpilot_bf_inoc_scaffold_833_curated_5
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4120..5949
DNA (1830bp) protein (610aa)
peptidase S8/S53 subtilisin kexin sedolisin; K14645 serine protease [EC:3.4.21.-]
Putative serine metalloprotease n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG24_9BURK
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_833_curated_6
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6078..6782)
DNA (705bp) protein (235aa)
hypothetical protein id=12550088 bin=BDI species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_833_curated_7
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6792..7469)
DNA (678bp) protein (226aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=2 Tax=Delftia RepID=F6AQ58_DELSC
HAD-superfamily hydrolase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_833_curated_8
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7803..8084)
DNA (282bp) protein (94aa)
cation transporter id=12550764 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
trkG; membrane component of K+ transport systems; K03498 trk system potassium uptake protein TrkH
Tax=CG_Rhodof_02
SCNpilot_bf_inoc_scaffold_833_curated_9
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8081..9274)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002D77A3E
trkG; membrane component of K+ transport systems; K03498 trk system potassium uptake protein TrkH
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_833_curated_10
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9286..10674)
DNA (1389bp) protein (463aa)
trkA; NAD binding component of K+ transport system; K03499 trk system potassium uptake protein TrkA id=5080390 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
trkA; NAD binding component of K+ transport system; K03499 trk system potassium uptake protein TrkA
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_bf_inoc_scaffold_833_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10761..11195)
DNA (435bp) protein (145aa)
UPF0225 protein Q5W_1267 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MR53_9BURK
UPF0225 protein Q5W_1267 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K09858 SEC-C motif domain protein
SCNpilot_bf_inoc_scaffold_833_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11192..12328)
DNA (1137bp) protein (379aa)
butyryl-CoA dehydrogenase n=1 Tax=Brachymonas chironomi RepID=UPI000361B170
acyl-CoA dehydrogenase domain-containing protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_833_curated_13
Pseudomonas sp. RS-16, Proteobacteria, Bacteria

Not on your lists

comp(12336..13637)
DNA (1302bp) protein (434aa)
Carboxypeptidase G2; Short=CPDG2;; EC=3.4.17.11;; Folate hydrolase G2; Glutamate carboxypeptidase; Pteroylmonoglutamic acid hydrolase G2; AltName: INN=Glucarpidase;; Flags: Precursor;; TaxID=312 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp. (strain RS-16).;"
carboxypeptidase n=1 Tax=Variovorax paradoxus RepID=UPI00037AD3EA
putative carboxypeptidase, M20A family
SCNpilot_bf_inoc_scaffold_833_curated_14
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13721..14806)
DNA (1086bp) protein (362aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q077_ACIAP
SCNpilot_bf_inoc_scaffold_833_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14870..15112)
DNA (243bp) protein (81aa)
4Fe-4S ferredoxin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003788FAB
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit {ECO:0000313|EMBL:GAD21224.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
4Fe-4S ferredoxin
SCNpilot_bf_inoc_scaffold_833_curated_16
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15213..15800)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002377884
NnrU family protein {ECO:0000313|EMBL:EER57780.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_833_curated_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15906..16859
DNA (954bp) protein (318aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
arginase; K01476 arginase [EC:3.5.3.1]
Arginase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQJ5_9BURK
SCNpilot_bf_inoc_scaffold_833_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16956..18200
DNA (1245bp) protein (415aa)
peptidase M20D, amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] id=5080612 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_833_curated_19
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18217..19326
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000380928C
Uncharacterized protein {ECO:0000313|EMBL:KJA11860.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_833_curated_20
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19340..20314)
DNA (975bp) protein (325aa)
NTE family protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XH82_DELAC
patatin; K07001 NTE family protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_833_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20388..20810)
DNA (423bp) protein (141aa)
PAS sensor protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTQ8_ALIDB
PAS sensor protein
PAS sensor protein {ECO:0000313|EMBL:ADV01644.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_833_curated_22
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20955..21776
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri RCH2 RepID=L0GIY2_PSEST
Uncharacterized protein {ECO:0000313|EMBL:AJE22493.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_833_curated_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21790..22782)
DNA (993bp) protein (331aa)
ubia prenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-]
UbiA prenyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ17_ALIDB
UbiA prenyltransferase {ECO:0000313|EMBL:ADU98951.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_833_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22884..23303
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1U0_VARPS
hypothetical protein; K09790 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS22860.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_833_curated_25
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23328..24470
DNA (1143bp) protein (381aa)
h16_A3623; Zn-dependent hydrolase / glyoxylase; K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
beta-lactamase n=1 Tax=Curvibacter lanceolatus RepID=UPI00037EC9BD
Beta-lactamase domain protein {ECO:0000313|EMBL:EER61678.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
SCNpilot_bf_inoc_scaffold_833_curated_26
unknown

Not on your lists

comp(24503..25159)
DNA (657bp) protein (219aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_833_curated_27
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25290..26771)
DNA (1482bp) protein (494aa)
amidase (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5AFR0_9PROT
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_833_curated_28
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26883..27365)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000377C22F
Peptidase M23B {ECO:0000313|EMBL:KJA11970.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
peptidoglycan-binding LysM
SCNpilot_bf_inoc_scaffold_833_curated_29
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27446..28258
DNA (813bp) protein (271aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Type III pantothenate kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5X6_9BURK
SCNpilot_bf_inoc_scaffold_833_curated_30
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28411..29853)
DNA (1443bp) protein (481aa)
Peptidase U62, modulator of DNA gyrase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BXD7_9BURK
Peptidase U62, modulator of DNA gyrase {ECO:0000313|EMBL:EHL22984.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
peptidase u62 modulator of DNA gyrase; K03568 TldD protein
Displaying 30 items

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