ggKbase home page

SCNpilot_bf_inoc_scaffold_331_curated

Search features with annotation key words

Displaying items 31-60 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_331_curated_31
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35707..37212)
DNA (1506bp) protein (502aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZM0_RAMTT
SCNpilot_bf_inoc_scaffold_331_curated_32
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37214..38950)
DNA (1737bp) protein (579aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129]
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:ACS17564.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ACS17564.1};; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Peptidoglycan glycosyltransferase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CNE8_VARPS
SCNpilot_bf_inoc_scaffold_331_curated_33
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38947..39252)
DNA (306bp) protein (102aa)
cell division protein FtsL n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000362692A
cell division protein FtsL; K03586 cell division protein FtsL
Cell division protein FtsL {ECO:0000256|HAMAP-Rule:MF_00910}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_331_curated_34
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39249..40190)
DNA (942bp) protein (314aa)
rsmH; ribosomal RNA small subunit methyltransferase H RsmH (EC:2.1.1.199)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Variovorax paradoxus B4 RepID=T1X706_VARPD
SCNpilot_bf_inoc_scaffold_331_curated_35
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40204..40632)
DNA (429bp) protein (143aa)
Protein MraZ n=2 Tax=Acidovorax RepID=MRAZ_ACIET
cell division protein MraZ; K03925 MraZ protein
Transcriptional regulator MraZ; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_331_curated_36
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41216..42553)
DNA (1338bp) protein (446aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK24_9BURK
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hslU; ATP-dependent hsl protease; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
SCNpilot_bf_inoc_scaffold_331_curated_37
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42653..43198)
DNA (546bp) protein (182aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
ATP-dependent protease subunit HslV n=1 Tax=Acidovorax sp. CF316 RepID=J0U418_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_bf_inoc_scaffold_331_curated_38
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43318..45033)
DNA (1716bp) protein (572aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7X9_ACIAP
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_331_curated_39
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45163..45912)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZL2_RAMTT
hypothetical protein; K06204 DnaK suppressor protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92041.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_331_curated_40
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46187..47248)
DNA (1062bp) protein (354aa)
cobalamin biosynthesis protein CobW n=1 Tax=Variovorax paradoxus RepID=UPI00035C0A6B
cobalamin synthesis protein, P47K
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_bf_inoc_scaffold_331_curated_41
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47505..48320
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3J9_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92473.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_331_curated_42

Not on your lists

comp(48342..49316)
DNA (975bp) protein (325aa)
Tyrosine recombinase XerC n=1 Tax=uncultured bacterium RepID=C6L108_9BACT
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
xerC; site-specific recombinase; K03733 integrase/recombinase XerC
SCNpilot_bf_inoc_scaffold_331_curated_43
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49476..50060
DNA (585bp) protein (195aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
phosphatidylglycerophosphatase A; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27]
Phosphatidylglycerophosphatase A n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8K2_ALIDK
SCNpilot_bf_inoc_scaffold_331_curated_44
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50067..50600
DNA (534bp) protein (178aa)
CinA domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2Y2_ACISJ
CinA domain-containing protein; K03743
CinA domain protein {ECO:0000313|EMBL:ABM40607.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_331_curated_45
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50593..52173)
DNA (1581bp) protein (527aa)
Dipeptide/oligopeptide ABC transporter periplasmic protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHQ4_9BURK
Dipeptide/oligopeptide ABC transporter periplasmic protein {ECO:0000313|EMBL:EIK88744.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
dipeptide/oligopeptide ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_331_curated_46
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52372..53148
DNA (777bp) protein (259aa)
amino acid ABC transporter ATP-binding protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030629CF
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJW43693.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_331_curated_47
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53162..53875
DNA (714bp) protein (238aa)
histidinol dehydrogenase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00031DD4FC
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family {ECO:0000313|EMBL:ABE45969.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_331_curated_48
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53982..55199
DNA (1218bp) protein (406aa)
ABC transporter substrate-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ8_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EIK89038.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_331_curated_49
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55276..56496
DNA (1221bp) protein (407aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TVV5_ALIDB
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:GAO24014.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_331_curated_50
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56524..57408
DNA (885bp) protein (295aa)
Inner-membrane translocator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ7_9BURK
Inner-membrane translocator {ECO:0000313|EMBL:EIK89037.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative branched-chain amino acid ABC transporter, permease component; K01997 branched-chain amino acid transport system permease protein
SCNpilot_bf_inoc_scaffold_331_curated_51
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57413..58366
DNA (954bp) protein (318aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ6_9BURK
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EIK89036.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_bf_inoc_scaffold_331_curated_52
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58416..59993)
DNA (1578bp) protein (526aa)
aldehyde dehydrogenase; K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12]
aldehyde dehydrogenase n=1 Tax=Pseudomonas sp. PAMC 25886 RepID=UPI000289404F
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_bf_inoc_scaffold_331_curated_53
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60241..60903)
DNA (663bp) protein (221aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD44_ACISJ
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACM34837.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_331_curated_54
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61488..61991
DNA (504bp) protein (168aa)
Proteinase inhibitor I11, ecotin n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YPB4_9RHOO
Proteinase inhibitor I11, ecotin {ECO:0000313|EMBL:ENO84028.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
ecotin; K08276 ecotin
SCNpilot_bf_inoc_scaffold_331_curated_55
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62180..65260
DNA (3081bp) protein (1027aa)
UvrABC system protein A n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB49_ACIAP
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
UvrABC system protein A; K03701 excinuclease ABC subunit A
SCNpilot_bf_inoc_scaffold_331_curated_56
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65226..65765)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTQ6_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20244.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_331_curated_57
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65827..66426)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CE6FD
Crp/Fnr family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACS20245.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_331_curated_58
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66471..67091)
DNA (621bp) protein (207aa)
Glutathione S-transferase domain protein id=1274618 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
glutathione S-transferase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_331_curated_59
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67179..67700)
DNA (522bp) protein (174aa)
Putative uncharacterized protein id=1274562 bin=GWE1_Burkholderiales_65_30 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_331_curated_60
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67838..68998
DNA (1161bp) protein (387aa)
NAD(P)(+) transhydrogenase {ECO:0000313|EMBL:EIK92118.1}; EC=1.6.1.1 {ECO:0000313|EMBL:EIK92118.1};; Flags: Fragment;; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
NAD(P)(+) transhydrogenase (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha n=1 Tax=Variovorax paradoxus RepID=UPI00037E0C08
Displaying items 31-60 of 82 in total

View Taxonomy