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SCNpilot_bf_inoc_scaffold_742_curated

Search features with annotation key words

Displaying items 61-90 of 138 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_742_curated_61
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62990..63496)
DNA (507bp) protein (169aa)
outer membrane chaperone Skp n=1 Tax=Acidovorax radicis RepID=UPI0002375494
outer membrane chaperone Skp
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_742_curated_62
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63545..65749)
DNA (2205bp) protein (735aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037035DF
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
outer membrane protein assembly complex, YaeT protein; K07277 outer membrane protein
SCNpilot_bf_inoc_scaffold_742_curated_63
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65806..67179)
DNA (1374bp) protein (458aa)
membrane protein; K11749 regulator of sigma E protease [EC:3.4.24.-]
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Candidate membrane protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVS7_RAMTT
SCNpilot_bf_inoc_scaffold_742_curated_64
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67212..68405)
DNA (1194bp) protein (398aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] id=12551930 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_742_curated_65
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68402..69268)
DNA (867bp) protein (289aa)
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Phosphatidate cytidylyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W913_ACISJ
SCNpilot_bf_inoc_scaffold_742_curated_66
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69284..70015)
DNA (732bp) protein (244aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=12551526 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
SCNpilot_bf_inoc_scaffold_742_curated_67
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70176..70736)
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVS3_RAMTT
frr; ribosome recycling factor; K02838 ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_742_curated_68
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70764..71486)
DNA (723bp) protein (241aa)
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Uridylate kinase n=2 Tax=Alicycliphilus denitrificans RepID=E8TT70_ALIDB
SCNpilot_bf_inoc_scaffold_742_curated_69
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71609..72502)
DNA (894bp) protein (298aa)
endo-1,4-D-glucanase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00030D9B5D
tsf; elongation factor Ts; K02357 elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_742_curated_70
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(72637..72993)
DNA (357bp) protein (119aa)
30S ribosomal protein S2 n=1 Tax=Acidovorax sp. (strain JS42) RepID=RS2_ACISJ
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_742_curated_71
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73638..74891
DNA (1254bp) protein (418aa)
D-amino-acid dehydrogenase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino-acid dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UV02_VARPE
Variovorax paradoxus strain MEDvA23 contig_15, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34411.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_bf_inoc_scaffold_742_curated_72
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75700..76521
DNA (822bp) protein (274aa)
Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4W8_RAMTT
peptidoglycan lytic transglycosylase
Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein {ECO:0000313|EMBL:AEG92624.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_742_curated_73
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76714..77964
DNA (1251bp) protein (417aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTV8_9BURK
SCNpilot_bf_inoc_scaffold_742_curated_74
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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78099..78548
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR id=1266508 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_742_curated_75
unknown

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comp(78606..79241)
DNA (636bp) protein (212aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_742_curated_76

Not on your lists

comp(79397..79843)
DNA (447bp) protein (149aa)
trxC; thioredoxin 2; K03672 thioredoxin 2 [EC:1.8.1.8]
Thioredoxin family protein n=1 Tax=uncultured organism RepID=D8VMN4_9ZZZZ
Thioredoxin family protein {ECO:0000313|EMBL:ACY24669.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_bf_inoc_scaffold_742_curated_77
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79859..80197)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVF1_9BURK
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_742_curated_78
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80364..80858
DNA (495bp) protein (165aa)
Phospholipid-binding protein, PBP family n=2 Tax=Acidovorax RepID=A1W3W2_ACISJ
pebp family protein; K06910
Phospholipid-binding protein, PBP family {ECO:0000313|EMBL:ABM40937.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_742_curated_79
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80869..81339)
DNA (471bp) protein (157aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Alicycliphilus denitrificans RepID=E8TZD0_ALIDB
transcriptional regulator, rrf2 family; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:ADV00951.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_742_curated_80
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81428..82150
DNA (723bp) protein (241aa)
Iron-sulfur cluster repair di-iron protein n=2 Tax=Alicycliphilus denitrificans RepID=F4GC47_ALIDK
iron-sulfur cluster repair di-iron protein; K07322 regulator of cell morphogenesis and NO signaling
Iron-sulfur cluster repair di-iron protein {ECO:0000313|EMBL:AEB83621.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_742_curated_81
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82202..82420)
DNA (219bp) protein (73aa)
SlyX family protein n=2 Tax=Acidovorax RepID=A1WAL8_ACISJ
slyx family protein; K03745 SlyX protein
SlyX family protein {ECO:0000313|EMBL:ACM33951.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_742_curated_82
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82426..83628)
DNA (1203bp) protein (401aa)
GntR family transcriptional regulator (EC:2.6.1.57)
aspartate aminotransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI00035D70B4
GntR family transcriptional regulator {ECO:0000313|EMBL:GAD24248.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_bf_inoc_scaffold_742_curated_83
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83720..84358
DNA (639bp) protein (213aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KU22_9BURK
SCNpilot_bf_inoc_scaffold_742_curated_84
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84607..86055)
DNA (1449bp) protein (483aa)
Outer membrane efflux protein, NodT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XFB9_VARPD
outer membrane efflux protein, NodT family
Outer membrane efflux protein, NodT family {ECO:0000313|EMBL:AGU50810.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_742_curated_85
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86055..89327)
DNA (3273bp) protein (1091aa)
Acriflavin resistance protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNT5_ACIAC
Acriflavin resistance protein {ECO:0000313|EMBL:ABM32623.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
acriflavin resistance protein; K07789 RND superfamily, multidrug transport protein MdtC
SCNpilot_bf_inoc_scaffold_742_curated_86
unknown

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comp(89324..90031)
DNA (708bp) protein (236aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_742_curated_87
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90028..93222)
DNA (3195bp) protein (1065aa)
acriflavin resistance protein n=1 Tax=Variovorax paradoxus RepID=UPI0003694BA5
Multidrug resistance protein MdtB {ECO:0000313|EMBL:AGU50812.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
mdtB; multidrug resistance protein MdtB
SCNpilot_bf_inoc_scaffold_742_curated_88
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93244..94725)
DNA (1482bp) protein (494aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNT3_ACIAC
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABM32621.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_742_curated_89
unknown

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94926..95084
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_742_curated_90
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95117..95911)
DNA (795bp) protein (265aa)
TatD-like protein deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-]
TatD-like protein deoxyribonuclease n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KXH3_9BURK
DNAase {ECO:0000313|EMBL:EYC52213.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
Displaying items 61-90 of 138 in total

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