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SCNpilot_bf_inoc_scaffold_581_curated

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Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_581_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..952
DNA (951bp) protein (317aa)
P-type conjugative transfer protein TrbL n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2BYY7_PSEAI
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EED68016.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_bf_inoc_scaffold_581_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

971..1675
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2C3N2_PSEAI
Conjugal transfer protein TrbF {ECO:0000313|EMBL:GAO26452.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_bf_inoc_scaffold_581_curated_3
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1672..2688
DNA (1017bp) protein (339aa)
P-type conjugative transfer protein TrbG n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2BYZ8_PSEAI
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:KIN89055.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
p-type conjugative transfer protein trbg; K03204 type IV secretion system protein VirB9
SCNpilot_bf_inoc_scaffold_581_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2691..4268
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2BTZ5_PSEAI
Conjugative transfer protein TrbI {ECO:0000313|EMBL:GAO21054.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_bf_inoc_scaffold_581_curated_5
unknown

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4549..4668
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_581_curated_6
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4946..5515
DNA (570bp) protein (190aa)
Transcription elongation factor GreB n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KP20_9BURK
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
transcription elongation factor GreB; K04760 transcription elongation factor GreB
SCNpilot_bf_inoc_scaffold_581_curated_7
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5632..7872)
DNA (2241bp) protein (747aa)
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:ABM34136.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ABM34136.1};; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
relA; GTP pyrophosphokinase; K00951 GTP pyrophosphokinase [EC:2.7.6.5]
Candidate GTP pyrophosphokinase (GTP pyrophosphokinase) n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYP4_RAMTT
SCNpilot_bf_inoc_scaffold_581_curated_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7969..8169)
DNA (201bp) protein (67aa)
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testos
DNA-directed RNA polymerase subunit omega n=4 Tax=Comamonas testosteroni RepID=D0J5N5_COMT2
SCNpilot_bf_inoc_scaffold_581_curated_9
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8193..8813)
DNA (621bp) protein (207aa)
gmk; guanylate kinase; K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Guanylate kinase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYP2_RAMTT
SCNpilot_bf_inoc_scaffold_581_curated_10
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9112..9753)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C183_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL21738.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_581_curated_11
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9799..10857)
DNA (1059bp) protein (353aa)
Luciferase family protein id=1287763 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
luciferase-like
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_581_curated_12
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11164..11583
DNA (420bp) protein (140aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
alkylhydroperoxidase n=1 Tax=Rhizobium giardinii RepID=UPI000360CA18
hypothetical protein
SCNpilot_bf_inoc_scaffold_581_curated_13
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11723..14284
DNA (2562bp) protein (854aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122X8_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE46414.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_581_curated_14
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14411..15076
DNA (666bp) protein (222aa)
Putative esterase n=1 Tax=Polaromonas sp. CF318 RepID=J2KW55_9BURK
Putative esterase {ECO:0000313|EMBL:EJL77243.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
carboxylesterase; K06999 phospholipase/carboxylesterase
SCNpilot_bf_inoc_scaffold_581_curated_15
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15386..16573)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI00037542FF
membrane dipeptidase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_581_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16579..17676)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003604BA3
hypothetical protein
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17847.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_bf_inoc_scaffold_581_curated_17
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17794..18669)
DNA (876bp) protein (292aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Polaromonas sp. CF318 RepID=J3CRW3_9BURK
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:EJL77264.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
peptidase m23
SCNpilot_bf_inoc_scaffold_581_curated_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18825..19337
DNA (513bp) protein (171aa)
Hemerythrin-like metal-binding protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WVQ5_COMTE
Hemerythrin-like metal-binding protein {ECO:0000313|EMBL:EED67677.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
hemerythrin-like metal-binding protein; K07216 hemerythrin
SCNpilot_bf_inoc_scaffold_581_curated_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19366..20004)
DNA (639bp) protein (213aa)
GntR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTS1_9BURK
GntR family transcriptional regulator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_581_curated_20
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20150..22393
DNA (2244bp) protein (748aa)
methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Candidate methylmalonyl-CoA mutase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWF9_RAMTT
Candidate methylmalonyl-CoA mutase {ECO:0000313|EMBL:AEG92913.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_581_curated_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22394..23416
DNA (1023bp) protein (341aa)
arginine/ornithine transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037EEF72
Arginine/ornithine transport system ATPase {ECO:0000313|EMBL:GAD22093.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_bf_inoc_scaffold_581_curated_22
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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23422..24249
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D4X8_LARHH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO75919.1}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
SCNpilot_bf_inoc_scaffold_581_curated_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24280..25812
DNA (1533bp) protein (511aa)
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3]
methylmalonyl-CoA carboxyltransferase n=1 Tax=Brachymonas chironomi RepID=UPI00037B57E8
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_581_curated_24
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26053..28113
DNA (2061bp) protein (687aa)
carbamoyl-phosphate synthase L chain; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
acetyl-CoA carboxylase n=1 Tax=Brachymonas chironomi RepID=UPI000362DCF4
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:EIK92607.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_bf_inoc_scaffold_581_curated_25
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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28132..28431
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036BFDA3
UPF0235 protein QR66_06625 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein; K09131 hypothetical protein
SCNpilot_bf_inoc_scaffold_581_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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28508..29515
DNA (1008bp) protein (336aa)
beta-lactamase n=1 Tax=Acidovorax radicis RepID=UPI00023758CB
putative beta-lactamase
Putative beta-lactamase {ECO:0000313|EMBL:AGU51974.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_581_curated_27
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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29520..30137
DNA (618bp) protein (206aa)
pyrazinamidase/nicotinamidase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000369E4DD
Nicotinamidase {ECO:0000313|EMBL:KDP86041.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCNpilot_bf_inoc_scaffold_581_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30214..30687
DNA (474bp) protein (158aa)
lactoylglutathione lyase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
UPI0003CFD9E0 related cluster n=1 Tax=unknown RepID=UPI0003CFD9E0
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36286.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_bf_inoc_scaffold_581_curated_29
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30857..32689
DNA (1833bp) protein (611aa)
glutamate synthase (nadph) (EC:1.4.1.13)
Glutamate synthase (NADPH) n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZE2_VARPE
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_581_curated_30
unknown

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comp(33465..33590)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying items 1-30 of 88 in total

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