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SCNpilot_bf_inoc_scaffold_3507_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_3507_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..623)
DNA (621bp) protein (207aa)
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni
pyruvate carboxyltransferase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
4-hyroxy-2-oxovalerate aldolase n=1 Tax=Burkholderia kururiensis RepID=UPI000349263C
SCNpilot_bf_inoc_scaffold_3507_curated_2
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(634..1539)
DNA (906bp) protein (302aa)
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
Acetaldehyde dehydrogenase n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZPH3_THASP
SCNpilot_bf_inoc_scaffold_3507_curated_3
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1561..2349)
DNA (789bp) protein (263aa)
2-hydroxyhexa-2,4-dienoate hydratase {ECO:0000313|EMBL:EWS54690.1}; EC=4.2.1.132 {ECO:0000313|EMBL:EWS54690.1};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
4-oxalocrotonate decarboxylase; K01617 4-oxalocrotonate decarboxylase [EC:4.1.1.77]
4-oxalocrotonate decarboxylase n=1 Tax=Nevskia ramosa RepID=UPI0003B40B38
SCNpilot_bf_inoc_scaffold_3507_curated_4
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2361..3149)
DNA (789bp) protein (263aa)
4-oxalocrotonate decarboxylase (EC:4.2.1.80); K02554 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
2-keto-4-pentenoate hydratase n=1 Tax=Nevskia ramosa RepID=UPI0003B66201
4-oxalocrotonate decarboxylase {ECO:0000313|EMBL:EIT70471.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
SCNpilot_bf_inoc_scaffold_3507_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3154..3996)
DNA (843bp) protein (281aa)
2,6-dioxo-6-phenylhexa-3-enoate hydrolase (EC:3.7.1.8)
2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Nevskia ramosa RepID=UPI0003B38569
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ADU98113.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_3507_curated_6
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4018..5475)
DNA (1458bp) protein (486aa)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase oxidoreductase (EC:1.2.1.60); K10217 aminomuconate-semialdehyde dehydrogenase [EC:1.2.1.32]
2-hydroxymuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:EWS54687.1}; EC=1.2.1.85 {ECO:0000313|EMBL:EWS54687.1};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Nevskia ramosa RepID=UPI0003B55C33
SCNpilot_bf_inoc_scaffold_3507_curated_7
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5472..5921)
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q390P2_BURS3
Uncharacterized protein {ECO:0000313|EMBL:AIO46738.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_3507_curated_8
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5921..6457)
DNA (537bp) protein (179aa)
Metapyrocatechase {ECO:0000313|EMBL:EWS64334.1}; EC=1.13.11.2 {ECO:0000313|EMBL:EWS64334.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
catechol 2,3 dioxygenase; K00446 catechol 2,3-dioxygenase [EC:1.13.11.2] id=5083397 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
catechol 2,3-dioxygenase; K00446 catechol 2,3-dioxygenase [EC:1.13.11.2]
Displaying 8 items

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