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SCNpilot_bf_inoc_scaffold_601_curated

Search features with annotation key words

Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_601_curated_31
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26449..27198
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Y35_RHOFD
hypothetical protein; K07090
Tax=CG_Rhodof_01
SCNpilot_bf_inoc_scaffold_601_curated_32
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27574..28263)
DNA (690bp) protein (230aa)
hypothetical protein; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000380AA05
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_601_curated_33
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28364..30649)
DNA (2286bp) protein (762aa)
TonB-dependent siderophore receptor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9F2_ACIDE
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EER58893.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
outer membrane protein TonB-dependent receptor
SCNpilot_bf_inoc_scaffold_601_curated_34
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30867..31343)
DNA (477bp) protein (159aa)
Bacterioferritin n=1 Tax=Variovorax sp. CF313 RepID=J3CSL2_9BURK
Bacterioferritin {ECO:0000256|RuleBase:RU000623}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
bacterioferritin; K03594 bacterioferritin
SCNpilot_bf_inoc_scaffold_601_curated_35
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31484..33208
DNA (1725bp) protein (575aa)
NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWM6_RAMTT
NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein {ECO:0000313|EMBL:AEG94170.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_601_curated_36
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33205..36048
DNA (2844bp) protein (948aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEW1_ACIET
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:ACM34231.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_601_curated_37
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36160..37155
DNA (996bp) protein (332aa)
hypothetical protein id=12549773 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
protein bugT-like protein
Protein bugT-like protein {ECO:0000313|EMBL:ADX47725.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_601_curated_38
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37160..39316
DNA (2157bp) protein (719aa)
CoA-binding domain-containing protein; K01905 acetyl-CoA synthetase (ADP-forming) [EC:6.2.1.13]
CoA-binding domain protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNK8_VEREI
CoA-binding domain protein {ECO:0000313|EMBL:ABM59215.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_bf_inoc_scaffold_601_curated_39
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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39393..40130
DNA (738bp) protein (246aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNK7_VEREI
enoyl-CoA hydratase/isomerase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_bf_inoc_scaffold_601_curated_40
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40134..40973
DNA (840bp) protein (280aa)
Formate dehydrogenase, subunit FdhD n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TD8_RHOFD
formate dehydrogenase subunit FdhD; K02379 FdhD protein
Formate dehydrogenase, subunit FdhD {ECO:0000313|EMBL:ABD70965.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_bf_inoc_scaffold_601_curated_41
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40987..41883)
DNA (897bp) protein (299aa)
Enoyl-CoA hydratase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNC2_TISMK
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:AFK54260.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_bf_inoc_scaffold_601_curated_42
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41960..44482
DNA (2523bp) protein (841aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEI0_ACIET
hypothetical protein; K02004 putative ABC transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34219.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_601_curated_43
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44544..46088
DNA (1545bp) protein (515aa)
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124P9_POLSJ
periplasmic sensor signal transduction histidine kinase
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_bf_inoc_scaffold_601_curated_44
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46085..46708
DNA (624bp) protein (208aa)
Two component transcriptional regulator LuxR n=1 Tax=Acidovorax sp. KKS102 RepID=K0I453_9BURK
two component transcriptional regulator LuxR
Two component transcriptional regulator LuxR {ECO:0000313|EMBL:AFU47967.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_601_curated_45
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46815..47318
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE56_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:CBA31738.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_601_curated_46
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47315..48010
DNA (696bp) protein (232aa)
Ankyrin n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MRA8_9BURK
Ankyrin {ECO:0000313|EMBL:EIK91748.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ankyrin; K06867
SCNpilot_bf_inoc_scaffold_601_curated_47
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48137..49072)
DNA (936bp) protein (312aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003643DBF
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS21533.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_601_curated_48
unknown

Not on your lists

49252..49554
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_601_curated_49
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49735..50376)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XW40_RAMTT
hypothetical protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_601_curated_50
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50373..51050)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036749F3
radC; putative DNA repair protein RadC
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_601_curated_51
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51108..51551
DNA (444bp) protein (148aa)
FKBP-type peptidylprolyl isomerase; K03774 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q0T8_ACIAP
SCNpilot_bf_inoc_scaffold_601_curated_52
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51548..52609
DNA (1062bp) protein (354aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Acidovorax avenae RepID=UPI0002D9492E
SCNpilot_bf_inoc_scaffold_601_curated_53
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52719..54029
DNA (1311bp) protein (437aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] id=5079771 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_601_curated_54
unknown

Not on your lists

comp(54514..54702)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_601_curated_55
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54855..55259)
DNA (405bp) protein (135aa)
Putative bacteriophage-related protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XWJ8_RALSO
hypothetical protein
Putative bacteriophage-related protein {ECO:0000313|EMBL:CAD16183.1}; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
SCNpilot_bf_inoc_scaffold_601_curated_56
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55256..55966)
DNA (711bp) protein (237aa)
Putative conserved protein {ECO:0000313|EMBL:CDM57642.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCNpilot_bf_inoc_scaffold_601_curated_57
Neisseria gonorrhoeae, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55977..56705)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Neisseria gonorrhoeae RepID=UPI0001AF34C5
putative phage associated protein
Putative phage associated protein {ECO:0000313|EMBL:ACF31333.1}; TaxID=521006 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria gonorrhoeae (strain NCCP11945).;"
SCNpilot_bf_inoc_scaffold_601_curated_58
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(56956..59115)
DNA (2160bp) protein (720aa)
Primase 2 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZW3_THIK1
primase 2
Primase 2 {ECO:0000313|EMBL:ADG30529.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
SCNpilot_bf_inoc_scaffold_601_curated_59
unknown

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comp(59120..59302)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying items 31-59 of 59 in total

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