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SCNpilot_bf_inoc_scaffold_1218_curated

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1218_curated_1
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..1364
-----------------
DNA (1362bp)
protein (454aa)
gltB; NAD(P)H-dependent glutamate synthase large subunit GltB (EC:1.4.1.13 1.4.1.14 1.4.7.1); K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
NAD(P)H-dependent glutamate synthase large subunit GltB {ECO:0000313|EMBL:BAL94169.1}; EC=1.4.1.13 {ECO:0000313|EMBL:BAL94169.1};; EC=1.4.1.14 {ECO:0000313|EMBL:BAL94169.1};; EC=1.4.7.1 {ECO:0000313|EMBL:BAL94169.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
NAD(P)H-dependent glutamate synthase large subunit GltB n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMD2_RUBGI
SCNpilot_bf_inoc_scaffold_1218_curated_2
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1389..2831
-----------------
DNA (1443bp)
protein (481aa)
Glutamate synthase subunit beta {ECO:0000313|EMBL:EGJ08876.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EGJ08876.1};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
gltD; NAD(P)H-dependent glutamate synthase small subunit GltD (EC:1.4.1.13 1.4.1.14); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase subunit beta n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKK8_9BURK
SCNpilot_bf_inoc_scaffold_1218_curated_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2838..4127)
-----------------
DNA (1290bp)
protein (430aa)
Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WRY0_DELAC
Branched-chain amino acid transport system substrate-binding protein {ECO:0000313|EMBL:EPD35482.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_1218_curated_4
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4204..4797)
-----------------
DNA (594bp)
protein (198aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5T6_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX46898.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_1218_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4890..5936)
-----------------
DNA (1047bp)
protein (349aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1268622 species="Bacteria; Proteobacteria; Betapro
metalloendopeptidase, glycoprotease family (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
UGMP family protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F6AC5
SCNpilot_bf_inoc_scaffold_1218_curated_6
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5975..6415)
-----------------
DNA (441bp)
protein (147aa)
CBS domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EI75_9BURK
CBS domain-containing protein {ECO:0000313|EMBL:EJE51929.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
signal-transduction protein
SCNpilot_bf_inoc_scaffold_1218_curated_7
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6678..7358
-----------------
DNA (681bp)
protein (227aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y5F9_LEPCP
Putative ABC transporter periplasmic molybdate-binding protein {ECO:0000313|EMBL:KDB50918.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
hypothetical protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_1218_curated_8
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7375..8391
-----------------
DNA (1017bp)
protein (339aa)
Zinc-binding alcohol dehydrogenase family protein n=1 Tax=Polaromonas sp. CF318 RepID=J3DDR0_9BURK
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:EJL89856.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
putative zinc-type alcohol dehydrogenase
SCNpilot_bf_inoc_scaffold_1218_curated_9
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8505..8750)
-----------------
DNA (246bp)
protein (82aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E354_THIND
hypothetical protein
Ferritin {ECO:0000313|EMBL:AHE97354.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
SCNpilot_bf_inoc_scaffold_1218_curated_10
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8803..9138
-----------------
DNA (336bp)
protein (112aa)
Protein-disulfide reductase (Thioredoxin)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVM9_RAMTT
protein-disulfide reductase (thioredoxin)
Protein-disulfide reductase (Thioredoxin)-like protein {ECO:0000313|EMBL:AEG91605.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1218_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9209..10162
-----------------
DNA (954bp)
protein (318aa)
Uncharacterized protein id=1274332 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
glycosyl transferase family protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1218_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10159..10935
-----------------
DNA (777bp)
protein (259aa)
Uroporphyrin-III C-methyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0ID14_9BURK
uroporphyrin-III C-methyltransferase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1218_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10951..12225
-----------------
DNA (1275bp)
protein (425aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003631D4F
Predicted flavoproteins {ECO:0000313|EMBL:GAD21084.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hi0933 family protein; K07007
SCNpilot_bf_inoc_scaffold_1218_curated_14
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12388..12600
-----------------
DNA (213bp)
protein (71aa)
30S ribosomal protein S21 n=2 Tax=Burkholderiales RepID=RS21_LEPCP
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 {ECO:0000255|HAMAP-Rule:MF_00358}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_bf_inoc_scaffold_1218_curated_15
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12679..13134
-----------------
DNA (456bp)
protein (152aa)
aspartyl-tRNA amidotransferase subunit B n=1 Tax=Curvibacter lanceolatus RepID=UPI000382EA7B
GatB/Yqey domain-containing protein; K09117 hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1218_curated_16
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13361..15343
-----------------
DNA (1983bp)
protein (661aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2LBR0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL82588.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1218_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15365..16738)
-----------------
DNA (1374bp)
protein (458aa)
Peptidase U62 modulator of DNA gyrase n=2 Tax=Alicycliphilus denitrificans RepID=E8U288_ALIDB
peptidase u62 modulator of DNA gyrase; K03592 PmbA protein
Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:ADU98892.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_1218_curated_18
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16782..17462
-----------------
DNA (681bp)
protein (227aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPV0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGI78118.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical protein; K09889 ribosome-associated protein
SCNpilot_bf_inoc_scaffold_1218_curated_19
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17496..18089
-----------------
DNA (594bp)
protein (198aa)
molybdenum cofactor synthesis domain-containing protein; K03831 molybdopterin adenylyltransferase [EC:2.7.7.75]
Molybdenum cofactor synthesis domain protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTJ1_DELAS
Molybdenum cofactor biosynthesis protein MogA {ECO:0000313|EMBL:KEH08539.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_bf_inoc_scaffold_1218_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18328..18564
-----------------
DNA (237bp)
protein (79aa)
17 kDa surface antigen n=2 Tax=Alicycliphilus denitrificans RepID=E8U1M6_ALIDB
hypothetical protein; K04062 osmotically inducible lipoprotein OsmB
17 kDa surface antigen {ECO:0000313|EMBL:ADU98830.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_1218_curated_21
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18575..19345)
-----------------
DNA (771bp)
protein (257aa)
serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VM18_POLNA
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_bf_inoc_scaffold_1218_curated_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19359..20189)
-----------------
DNA (831bp)
protein (277aa)
RNA methyltransferase; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
RNA methyltransferase, TrmH family, group 1 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4V6_ACISJ
SCNpilot_bf_inoc_scaffold_1218_curated_23
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20217..20570
-----------------
DNA (354bp)
protein (118aa)
UPF0345 protein Q5W_2537 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN66_9BURK
UPF0345 protein Q5W_2537 {ECO:0000256|HAMAP-Rule:MF_01537}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K09913 hypothetical protein
SCNpilot_bf_inoc_scaffold_1218_curated_24
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20577..21842
-----------------
DNA (1266bp)
protein (422aa)
Transporter n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY5_9BURK
Transporter {ECO:0000313|EMBL:EIK89175.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transporter
SCNpilot_bf_inoc_scaffold_1218_curated_25
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22236..23264
-----------------
DNA (1029bp)
protein (343aa)
Transcriptional regulator, AraC family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMR8_VEREI
putative virulence-regulating 38 kDa protein-like
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABM58925.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_bf_inoc_scaffold_1218_curated_26
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23436..24011
-----------------
DNA (576bp)
protein (192aa)
Aminotransferase {ECO:0000313|EMBL:ABM58926.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABM58926.1};; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Aminotransferase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMR9_VEREI
class III aminotransferase
SCNpilot_bf_inoc_scaffold_1218_curated_27
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24008..24766
-----------------
DNA (759bp)
protein (253aa)
Aminotransferase {ECO:0000313|EMBL:ABM58926.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABM58926.1};; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Aminotransferase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMR9_VEREI
class III aminotransferase
SCNpilot_bf_inoc_scaffold_1218_curated_28
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24817..26301
-----------------
DNA (1485bp)
protein (495aa)
succinate-semialdehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate semialdehyde dehydrogenase {ECO:0000313|EMBL:ABM58927.1}; EC=1.2.1.16 {ECO:0000313|EMBL:ABM58927.1};; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Succinate semialdehyde dehydrogenase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMS0_VEREI
SCNpilot_bf_inoc_scaffold_1218_curated_29
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27428..27922
-----------------
DNA (495bp)
protein (165aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMS1_VEREI
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:ABM58928.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_bf_inoc_scaffold_1218_curated_30
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28686..29036
-----------------
DNA (351bp)
protein (117aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMS2_VEREI
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABM58929.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Displaying items 1-30 of 31 in total

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