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SCNpilot_bf_inoc_scaffold_909_curated

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_909_curated_1
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..224
DNA (222bp) protein (74aa)
phoR1; alkaline phosphatase synthesis sensor protein PhoR (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
Two-component system sensor kinase n=1 Tax=Corynebacterium terpenotabidum Y-11 RepID=S4XEU6_9CORY
SCNpilot_bf_inoc_scaffold_909_curated_2
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(238..1746)
DNA (1509bp) protein (503aa)
beta-xylosidase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003462BA8
beta-xylosidase
Beta-xylosidase {ECO:0000313|EMBL:ACZ22038.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
SCNpilot_bf_inoc_scaffold_909_curated_3
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1755..2831)
DNA (1077bp) protein (359aa)
hisC2; histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Putative phenylalanine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01513}; EC=2.6.1.- {ECO:0000256|HAMAP-Rule:MF_01513};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
aminotransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003484793
SCNpilot_bf_inoc_scaffold_909_curated_4
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3222..3653)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI000368A9F1
hypothetical protein; K04767 acetoin utilization protein AcuB
Uncharacterized protein {ECO:0000313|EMBL:CBL46115.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_bf_inoc_scaffold_909_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3823..5262)
DNA (1440bp) protein (480aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPM4_9BURK
SCNpilot_bf_inoc_scaffold_909_curated_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5373..6425
DNA (1053bp) protein (351aa)
histidine kinase; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3]
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5U5_RAMTT
Candidate histidine kinase, classic {ECO:0000313|EMBL:AEG93979.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_909_curated_7
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6425..7171
DNA (747bp) protein (249aa)
Candidate response regulator, LytTR n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5U4_RAMTT
response regulator LytTR; K08083 two-component system, LytT family, response regulator AlgR
Candidate response regulator, LytTR {ECO:0000313|EMBL:AEG93978.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_909_curated_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7391..8254
DNA (864bp) protein (288aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002D799D6
SCNpilot_bf_inoc_scaffold_909_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8263..9054
DNA (792bp) protein (264aa)
uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen-III synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G3X7_ALIDK
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:GAO23937.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_909_curated_10
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9147..10202
DNA (1056bp) protein (352aa)
hemX domain-containing protein; K02496 uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
HemX domain protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7J4_ACIAP
HemX domain protein {ECO:0000313|EMBL:ADX47067.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_909_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10209..11489
DNA (1281bp) protein (427aa)
HemY domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X6Q6_VARPD
HemY domain-containing protein
HemY domain-containing protein {ECO:0000313|EMBL:AGU48582.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_909_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11603..12625)
DNA (1023bp) protein (341aa)
permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003729578
Predicted permease {ECO:0000313|EMBL:GAD20879.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_909_curated_13
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12668..13714)
DNA (1047bp) protein (349aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 198
phosphoribosylaminoimidazole synthetase n=1 Tax=Acidovorax avenae RepID=UPI000302DFED
SCNpilot_bf_inoc_scaffold_909_curated_14
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13880..14566
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003029E02
DnaA regulatory inactivator Hda {ECO:0000313|EMBL:EER57884.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
DnaA ATPase protein; K10763 DnaA-homolog protein
SCNpilot_bf_inoc_scaffold_909_curated_15
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14606..15283
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0003173D16
hypothetical protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_909_curated_16
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15280..16857
DNA (1578bp) protein (526aa)
pcnB; polynucleotide adenylyltransferase; K00970 poly(A) polymerase [EC:2.7.7.19]
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Poly(A) polymerase I n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y541_RAMTT
SCNpilot_bf_inoc_scaffold_909_curated_17
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16869..17345
DNA (477bp) protein (159aa)
folK; 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y540_RAMTT
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_909_curated_18
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17481..17843
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1WB57_ACISJ
Membrane protein {ECO:0000313|EMBL:KJA11762.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein; K09922 hypothetical protein
SCNpilot_bf_inoc_scaffold_909_curated_19
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17961..18608
DNA (648bp) protein (216aa)
phosphate transport regulator n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002D3D960
hypothetical protein; K07220 hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_909_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18626..19636
DNA (1011bp) protein (337aa)
UPI0003A694B1 related cluster n=1 Tax=unknown RepID=UPI0003A694B1
Phosphate transporter {ECO:0000313|EMBL:GAD20618.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
phosphate transporter; K03306 inorganic phosphate transporter, PiT family
SCNpilot_bf_inoc_scaffold_909_curated_21
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19710..20192)
DNA (483bp) protein (161aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1WB54_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM43479.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_909_curated_22
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20420..20680
DNA (261bp) protein (87aa)
30S ribosomal protein S16 n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1P4_RAMTT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_bf_inoc_scaffold_909_curated_23
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20694..21260
DNA (567bp) protein (189aa)
Ribosome maturation factor RimM n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1P5_RAMTT
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_909_curated_24
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21282..21560)
DNA (279bp) protein (93aa)
Cell division protein FtsB n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQH4_9BURK
cell division protein FtsB
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_909_curated_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21672..22958)
DNA (1287bp) protein (429aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Enolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U251_ALIDB
SCNpilot_bf_inoc_scaffold_909_curated_26
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23043..23333)
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WI98_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD39463.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_909_curated_27
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23337..23828)
DNA (492bp) protein (164aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000255|HAMAP-Rule:MF_00056}; EC=2.5.1.55 {ECO:0000255|HAMAP-Rule:MF_00056};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00056}; Short=KDO 8-P synthase {ECO:0000255|HAMAP-Rule:MF_00056};; Short=KDOPS {ECO:0000255|HAMAP-Rule:MF_00056};; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000255|HAMAP-Rule:MF_00056}; TaxID=397945 species="Bacteria; Proteobacteria; Betap
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Acidovorax avenae RepID=UPI00031F51B8
SCNpilot_bf_inoc_scaffold_909_curated_28
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24355..25455)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037EA7F8
Strain DSM 12611 Contig12, whole genome shotgun sequence {ECO:0000313|EMBL:KIO52000.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_909_curated_29
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(25922..26578)
DNA (657bp) protein (219aa)
electron transporter n=1 Tax=Pontibacter roseus RepID=UPI000373C36E
Electron transporter SenC {ECO:0000313|EMBL:KIF33704.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_bf_inoc_scaffold_909_curated_30
unknown

Not on your lists

comp(27109..27807)
DNA (699bp) protein (233aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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