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SCNpilot_bf_inoc_scaffold_2368_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_2368_curated_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..390
DNA (390bp) protein (130aa)
Putative cytochrome c oxidase, subunit I n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GFY8_ALIDK
putative cytochrome c oxidase subunit I
Putative cytochrome c oxidase, subunit I {ECO:0000313|EMBL:AEB86224.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_2368_curated_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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387..2318
DNA (1932bp) protein (644aa)
ferredoxin--NAD(+) reductase (EC:1.18.1.3)
Oxidoreductase FAD-binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TQH6_ALIDB
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_bf_inoc_scaffold_2368_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2721..3275)
DNA (555bp) protein (185aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TWJ6_ALIDB
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADU99519.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_2368_curated_4
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3316..3540)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KBU0_AZOSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL96296.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_bf_inoc_scaffold_2368_curated_5
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3567..4469)
DNA (903bp) protein (301aa)
mhpA; FAD-dependent oxidoreductase (EC:1.14.13.-); K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
FAD-dependent oxidoreductase n=1 Tax=Thauera sp. 27 RepID=N6YNB6_9RHOO
FAD-dependent oxidoreductase {ECO:0000313|EMBL:ENO81504.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
SCNpilot_bf_inoc_scaffold_2368_curated_6
unknown

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4603..4698
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2368_curated_7
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5254..6219)
DNA (966bp) protein (322aa)
Beta-lactamase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZY04_9RHOO
Beta-lactamase {ECO:0000313|EMBL:ENO97014.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
beta-lactamase
SCNpilot_bf_inoc_scaffold_2368_curated_8
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6393..7274)
DNA (882bp) protein (294aa)
Probable transcriptional regulator n=3 Tax=Bordetella bronchiseptica RepID=K4QI75_BORBO
transcriptional regulator
Probable transcriptional regulator {ECO:0000313|EMBL:CCJ51623.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
SCNpilot_bf_inoc_scaffold_2368_curated_9
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7623..7853
DNA (231bp) protein (77aa)
PREDICTED: NAD(P)H:quinone oxidoreductase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12430
NADPH-dependent FMN reductase {ECO:0000313|EMBL:KEH13709.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
NADPH-dependent FMN reductase
SCNpilot_bf_inoc_scaffold_2368_curated_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7957..8544
DNA (588bp) protein (196aa)
Disulfide bond formation protein B n=1 Tax=Acidovorax sp. (strain JS42) RepID=DSBB_ACISJ
disulfide bond formation protein DsbB; K03611 disulfide bond formation protein DsbB
Disulfide bond formation protein B {ECO:0000255|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000255|HAMAP-Rule:MF_00286}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_2368_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8554..9621)
DNA (1068bp) protein (356aa)
guanine deaminase; K01487 guanine deaminase [EC:3.5.4.3]
Guanine deaminase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1M8_ALIDB
Guanine deaminase {ECO:0000313|EMBL:ADU98832.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_2368_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9767..11074)
DNA (1308bp) protein (436aa)
Xanthine/uracil/vitamin C permease n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1M9_ALIDB
xanthine/uracil/vitamin c permease; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease
Xanthine/uracil/vitamin C permease {ECO:0000313|EMBL:ADU98833.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_2368_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11090..12112)
DNA (1023bp) protein (341aa)
Regulatory protein LysR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1N0_ALIDB
LysR family transcriptional regulator
Regulatory protein LysR {ECO:0000313|EMBL:ADU98834.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_2368_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12167..14587)
DNA (2421bp) protein (807aa)
Xanthine dehydrogenase, molybdopterin binding subunit {ECO:0000313|EMBL:AEB86353.1}; EC=1.17.1.4 {ECO:0000313|EMBL:AEB86353.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
xanthine dehydrogenase, molybdopterin binding subunit (EC:1.17.1.4); K13482 xanthine dehydrogenase large subunit [EC:1.17.1.4]
Xanthine dehydrogenase, molybdopterin binding subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4D7_ALIDK
SCNpilot_bf_inoc_scaffold_2368_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14609..16156)
DNA (1548bp) protein (516aa)
xanthine dehydrogenase, small subunit (EC:1.17.3.2); K13481 xanthine dehydrogenase small subunit [EC:1.17.1.4]
Xanthine dehydrogenase, small subunit {ECO:0000313|EMBL:AEB86354.1}; EC=1.17.3.2 {ECO:0000313|EMBL:AEB86354.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Xanthine dehydrogenase, small subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4D8_ALIDK
SCNpilot_bf_inoc_scaffold_2368_curated_16
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16354..17700)
DNA (1347bp) protein (449aa)
argA; amino-acid acetyltransferase; K14682 amino-acid N-acetyltransferase [EC:2.3.1.1]
Amino-acid acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01105}; EC=2.3.1.1 {ECO:0000256|HAMAP-Rule:MF_01105};; N-acetylglutamate synthase {ECO:0000256|HAMAP-Rule:MF_01105}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Amino-acid acetyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYG0_RAMTT
SCNpilot_bf_inoc_scaffold_2368_curated_17
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17995..18207)
DNA (213bp) protein (71aa)
Integrase, catalytic region n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLJ8_VEREI
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABM58505.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_bf_inoc_scaffold_2368_curated_18
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18333..18989
DNA (657bp) protein (219aa)
UPI0003CFA4C8 related cluster n=1 Tax=unknown RepID=UPI0003CFA4C8
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESZ13069.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
two component LuxR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_2368_curated_19
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18991..20544)
DNA (1554bp) protein (518aa)
ATPase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000362F341
two-component hybrid sensor and regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Displaying 19 items

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