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SCNpilot_bf_inoc_scaffold_774_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_774_curated_1
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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482..1468
DNA (987bp) protein (329aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
Tryptophan--tRNA ligase n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BG31_THEXL
SCNpilot_bf_inoc_scaffold_774_curated_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1635..2093
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003811555
Uncharacterized protein {ECO:0000313|EMBL:KJU70886.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_774_curated_3
ACD4, Gracilibacteria, Bacteria

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comp(2170..4971)
DNA (2802bp) protein (934aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium (gcode 4) RepID=K2F7B0_9BACT
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
Tax=ACD4
SCNpilot_bf_inoc_scaffold_774_curated_4
ACD4, Gracilibacteria, Bacteria

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comp(4983..5786)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2FVR2_9BACT
FliA/WhiG family RNA polymerase sigma factor; K03090 RNA polymerase sigma-B factor
Tax=ACD4
SCNpilot_bf_inoc_scaffold_774_curated_5

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comp(5816..6214)
DNA (399bp) protein (133aa)
RsbW {ECO:0000313|EMBL:EKE27037.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EKE27037.1};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
RsbW n=1 Tax=uncultured bacterium (gcode 4) RepID=K2FYQ9_9BACT
anti-sigma B factor
SCNpilot_bf_inoc_scaffold_774_curated_6
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6235..6552)
DNA (318bp) protein (106aa)
Anti-sigma factor antagonist n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CL67_9CLOT
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist
SCNpilot_bf_inoc_scaffold_774_curated_7
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6731..9292)
DNA (2562bp) protein (854aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAV0_9CLOT
SCNpilot_bf_inoc_scaffold_774_curated_8
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9305..11221)
DNA (1917bp) protein (639aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CRW1_9CLOT
SCNpilot_bf_inoc_scaffold_774_curated_9
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11232..12341)
DNA (1110bp) protein (370aa)
DNA replication and repair protein RecF n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RECF_ALKMQ rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
recF; recombination protein F; K03629 DNA replication and repair protein RecF
SCNpilot_bf_inoc_scaffold_774_curated_10
Helcococcus kunzii, Helcococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12348..12587)
DNA (240bp) protein (80aa)
S4 domain-containing protein YaaA n=1 Tax=Helcococcus kunzii ATCC 51366 RepID=H3NQU0_9FIRM
S4 domain-containing protein YaaA {ECO:0000313|EMBL:EHR32087.1}; TaxID=883114 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Helcococcus.;" source="Helcococcus kunzii ATCC 51366.;"
RNA-binding S4 domain-containing protein
SCNpilot_bf_inoc_scaffold_774_curated_11
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12599..13705)
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAU4_9CLOT
SCNpilot_bf_inoc_scaffold_774_curated_12
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13937..15268)
DNA (1332bp) protein (444aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=DNAA_CLOBM rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein
SCNpilot_bf_inoc_scaffold_774_curated_13
Peptostreptococcus stomatis, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16079..16417
DNA (339bp) protein (113aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=596315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus stomatis DSM 17678.;"
rnpA; ribonuclease P; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Peptostreptococcus stomatis DSM 17678 RepID=E0E1M2_9FIRM
SCNpilot_bf_inoc_scaffold_774_curated_14
Clostridium haemolyticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16417..16632
DNA (216bp) protein (72aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Clostridium botulinum C str. Stockholm RepID=F7MJF6_CLOBO
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1443115 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium haemolyticum NCTC 8350.;"
UPF0161 protein
SCNpilot_bf_inoc_scaffold_774_curated_15
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16651..17370
DNA (720bp) protein (240aa)
Sec-independent factor for membrane protein insertion (YidC/SpoIIIJ family) n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PVZ9_CLOSD
oxaAA; sec-independent factor for membrane protein insertion; K03217 preprotein translocase subunit YidC
Sec-independent factor for membrane protein insertion (YidC/SpoIIIJ family) {ECO:0000313|EMBL:CBH22702.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_774_curated_16
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17370..18005
DNA (636bp) protein (212aa)
Jag protein n=1 Tax=Clostridium intestinale URNW RepID=U2PXW0_9CLOT
Jag protein {ECO:0000313|EMBL:ERK28619.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein; K06346 spoIIIJ-associated protein
SCNpilot_bf_inoc_scaffold_774_curated_17
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18089..19453
DNA (1365bp) protein (455aa)
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
tRNA modification GTPase MnmE n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=MNME_ALKOO rbh
SCNpilot_bf_inoc_scaffold_774_curated_18
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19515..21404
DNA (1890bp) protein (630aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=MNMG_ALKMQ rbh
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000255|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000255|HAMAP-Rule:MF_00129}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_774_curated_19
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21397..22095
DNA (699bp) protein (233aa)
gidB; 16S rRNA methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G {ECO:0000255|HAMAP-Rule:MF_00074}; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; Short=16S rRNA m7G methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074};; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RSMG_ALKMQ
SCNpilot_bf_inoc_scaffold_774_curated_20
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22186..22953
DNA (768bp) protein (256aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TXE0_ALKMQ
cobyrinic acid a,c-diamide synthase; K03496 chromosome partitioning protein
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ABR50858.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_774_curated_21
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22956..23834
DNA (879bp) protein (293aa)
Stage 0 sporulation protein J n=1 Tax=Clostridium novyi (strain NT) RepID=A0PX82_CLONN
Plasmid stablization protein ParB {ECO:0000313|EMBL:KGM96114.1}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4552.;"
stage 0 sporulation protein J; K03497 chromosome partitioning protein, ParB family
Displaying 21 items

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