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SCNpilot_bf_inoc_scaffold_690_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_690_curated_1
unknown

Not on your lists

comp(2..64)
DNA (63bp) protein (21aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_690_curated_2
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(131..763)
DNA (633bp) protein (211aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:KGG79663.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KGG79663.1};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
RNA polymerase sigma-70 factor n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TC39_HELMI
rpoE; RNA polymerase factor sigma-70; K03091 RNA polymerase sporulation-specific sigma factor
SCNpilot_bf_inoc_scaffold_690_curated_3
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(883..1623)
DNA (741bp) protein (247aa)
tRNA/rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA 2'-O ribose methyltransferase substrate binding family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4W0K7_CLOBI
RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EQK46601.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
SCNpilot_bf_inoc_scaffold_690_curated_4
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1633..2400)
DNA (768bp) protein (256aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
thyX; thymidylate synthase, flavin-dependent (EC:2.1.1.148); K03465 thymidylate synthase (FAD) [EC:2.1.1.148]
Thymidylate synthase ThyX n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0A3_9FIRM
SCNpilot_bf_inoc_scaffold_690_curated_5
unknown

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comp(2413..2715)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_690_curated_6
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2705..3184)
DNA (480bp) protein (160aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
Mini-ribonuclease 3 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ASG0_9CLOT
ribonuclease III
SCNpilot_bf_inoc_scaffold_690_curated_7
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3252..4733)
DNA (1482bp) protein (494aa)
gltX; glutamyl-tRNA synthetase; K09698 nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Glutamate--tRNA ligase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=SYE_ALKOO rbh
SCNpilot_bf_inoc_scaffold_690_curated_8
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4766..5023)
DNA (258bp) protein (86aa)
Cysteine-rich small domain n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIV8_ALKOO
Cysteine-rich small domain protein {ECO:0000313|EMBL:GAF03363.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_690_curated_9
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5026..5502)
DNA (477bp) protein (159aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00107}; Short=MECDP-synthase {ECO:0000255|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000255|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000255|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000255|HAMAP-Rule:MF_00107};; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=ISPF_PELCD
SCNpilot_bf_inoc_scaffold_690_curated_10
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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comp(5499..6215)
DNA (717bp) protein (239aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000372F3D0
Tax=RBG_13_Caldithrix_44_9_curated
SCNpilot_bf_inoc_scaffold_690_curated_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6376..7485)
DNA (1110bp) protein (370aa)
PIN domain protein n=7 Tax=Clostridium difficile RepID=D5Q1S8_CLODI
PilT domain-containing protein
PIN domain protein {ECO:0000313|EMBL:EFH08163.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
SCNpilot_bf_inoc_scaffold_690_curated_12
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7581..8063)
DNA (483bp) protein (161aa)
Transcriptional regulator, CarD family n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B426_CLOA9
CarD family transcriptional regulator
Transcriptional regulator, CarD family {ECO:0000313|EMBL:AFS79316.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
SCNpilot_bf_inoc_scaffold_690_curated_13
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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8268..8663
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LF60_THEPS
hypothetical protein
Tax=BJP_IG2158_Thermincola_46_17
SCNpilot_bf_inoc_scaffold_690_curated_14
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8793..10154)
DNA (1362bp) protein (454aa)
DNA repair protein RadA (EC:2.1.1.63); K04485 DNA repair protein RadA/Sms
DNA repair protein radA n=1 Tax=Caloramator australicus RC3 RepID=G0V3X8_9CLOT
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
SCNpilot_bf_inoc_scaffold_690_curated_15
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(10163..12598)
DNA (2436bp) protein (812aa)
ATPase AAA-2 domain protein n=2 Tax=root RepID=R6MHZ8_9FIRM
ATPase AAA-2 domain protein {ECO:0000313|EMBL:CDB99268.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
clpC; negative regulator of genetic competence; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
SCNpilot_bf_inoc_scaffold_690_curated_16
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12733..14814)
DNA (2082bp) protein (694aa)
Translation elongation factor G-related protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWW6_9CLOT
Translation elongation factor G-related protein {ECO:0000313|EMBL:EOD01142.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
translation elongation factor 2 (EF-2/EF-G); K02355 elongation factor G
SCNpilot_bf_inoc_scaffold_690_curated_17
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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comp(15109..17460)
DNA (2352bp) protein (784aa)
ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.2); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent id=2094775 bin=GWB2_Clostridiales_37_7 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_690_curated_18
Paenibacillus sp. IHBB 10380, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17719..19020)
DNA (1302bp) protein (434aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1566358 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. IHBB 10380.;"
glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
Glucose-6-phosphate isomerase n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9G9M2_9BACL
SCNpilot_bf_inoc_scaffold_690_curated_19
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19043..19990)
DNA (948bp) protein (316aa)
Glucokinase {ECO:0000313|EMBL:CDF57215.1}; EC=2.7.1.2 {ECO:0000313|EMBL:CDF57215.1};; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
ROK family glucokinase; K00845 glucokinase [EC:2.7.1.2]
Glucokinase n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RPQ7_9CLOT
SCNpilot_bf_inoc_scaffold_690_curated_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20023..22389)
DNA (2367bp) protein (789aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. It1.;"
glycogen phosphorylase; K00688 starch phosphorylase [EC:2.4.1.1]
Phosphorylase n=1 Tax=Clostridium novyi (strain NT) RepID=A0PXG5_CLONN
SCNpilot_bf_inoc_scaffold_690_curated_21
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22443..24620)
DNA (2178bp) protein (726aa)
putative alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20]
Probable alpha-glucosidase n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A7A5_CLOBO
Alpha-glucosidase {ECO:0000313|EMBL:KGN03135.1}; TaxID=1444290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4570.;"
SCNpilot_bf_inoc_scaffold_690_curated_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24644..25660)
DNA (1017bp) protein (339aa)
LacI family transcriptional regulator n=1 Tax=Clostridium tunisiense RepID=UPI0002FD75AE
alanine racemase; K02529 LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:KGN00572.1}; TaxID=1443128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. DC5.;"
SCNpilot_bf_inoc_scaffold_690_curated_23
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25834..26913
DNA (1080bp) protein (360aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
DNA polymerase IV n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CD93_9CLOT
nucleotidyltransferase/DNA polymerase involved in DNA repair
Displaying 23 items

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