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SCNpilot_bf_inoc_scaffold_17_curated

Search features with annotation key words

Displaying items 151-180 of 742 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_17_curated_151
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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153750..156119
DNA (2370bp) protein (790aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Clostridium intestinale URNW RepID=U2MYS4_9CLOT
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:ERK28397.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_bf_inoc_scaffold_17_curated_152
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

156122..158287
DNA (2166bp) protein (722aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Clostridium intestinale URNW RepID=U2NHC5_9CLOT
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:ERK28513.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
SCNpilot_bf_inoc_scaffold_17_curated_153
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

158297..159250
DNA (954bp) protein (318aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium intestinale URNW RepID=U2PP92_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ERK28260.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
dppD; dipeptide ABC transporter ATP-binding protein DppD; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_17_curated_154
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

159243..160010
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2PPW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK28470.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
oligopeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_17_curated_155
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

160229..161251
DNA (1023bp) protein (341aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYC3_THEOJ
TRAP transporter solute receptor, TAXI family; K07080
TRAP transporter solute receptor, TAXI family {ECO:0000313|EMBL:ADL08347.1}; Flags: Precursor;; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
SCNpilot_bf_inoc_scaffold_17_curated_156
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

161327..161896
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LX08_TEPAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDI40503.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
SCNpilot_bf_inoc_scaffold_17_curated_157
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

161911..163875
DNA (1965bp) protein (655aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LX07_TEPAE
TRAP transporter, 4TM/12TM fusion protein
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:CCP25585.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
SCNpilot_bf_inoc_scaffold_17_curated_158
Thermoanaerobacter siderophilus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(163963..164370)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9KT93_9THEO
Uncharacterized protein {ECO:0000313|EMBL:EIW00164.1}; TaxID=880478 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter siderophilus SR4.;"
bleomycin resistance protein; K04750 PhnB protein
SCNpilot_bf_inoc_scaffold_17_curated_159
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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164661..165341
DNA (681bp) protein (227aa)
HAD family hydrolase; K06019 pyrophosphatase PpaX [EC:3.6.1.1]
HAD family hydrolase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0002481C20
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ACL70665.1}; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
SCNpilot_bf_inoc_scaffold_17_curated_160
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

165479..166351
DNA (873bp) protein (291aa)
RND family efflux transporter, MFP subunit n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TVV2_9CLOT
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EKQ56850.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
RND family efflux transporter MFP subunit
SCNpilot_bf_inoc_scaffold_17_curated_161
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

166344..169382
DNA (3039bp) protein (1013aa)
Nodulation protein NolG {ECO:0000313|EMBL:KDR95784.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
Predicted transporter protein id=2063562 bin=GWB2_Clostridiales_37_7 species=[Clostridium] stercorarium genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
mdtC; multidrug resistance protein MdtC
SCNpilot_bf_inoc_scaffold_17_curated_162
Bacillus boroniphilus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

169459..169824
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bacillus sp. 17376 RepID=V6SU87_9BACI
Rhodanese-like domain protein {ECO:0000313|EMBL:GAE44304.1}; TaxID=1294265 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus boroniphilus JCM 21738.;"
rhodanese
SCNpilot_bf_inoc_scaffold_17_curated_163
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

170045..171367
DNA (1323bp) protein (441aa)
Glutamate synthase (NADPH) {ECO:0000313|EMBL:EHJ00145.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EHJ00145.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
sudA4; sulfide dehydrogenase subunit alpha (EC:1.8.-.- 1.18.1.2)
Glutamate synthase (NADPH) n=1 Tax=Clostridium sp. DL-VIII RepID=G7M5N0_9CLOT
SCNpilot_bf_inoc_scaffold_17_curated_164
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(171376..171951)
DNA (576bp) protein (192aa)
ANTAR domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQS2_9CLOT
ANTAR domain protein {ECO:0000313|EMBL:EDO62044.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
response regulator receiver and ANTAR domain protein
SCNpilot_bf_inoc_scaffold_17_curated_165
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

172061..173536
DNA (1476bp) protein (492aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U7M0_9CLOT
putative N-acetylmuramyl-L-alanine amidase
Tax=BJP_IG2157_Clostridiales_52_13
SCNpilot_bf_inoc_scaffold_17_curated_166
Prevotella baroniae, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

173559..174047
DNA (489bp) protein (163aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1115809 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella baroniae F0067.;"
S-ribosylhomocysteine lyase n=1 Tax=Prevotella baroniae F0067 RepID=U2P7H4_9BACT
LuxS protein involved in autoinducer AI2 synthesis
SCNpilot_bf_inoc_scaffold_17_curated_167
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

174052..174741
DNA (690bp) protein (230aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
pfs; 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase (EC:3.2.2.9 3.2.2.16); K01243 S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]
MTA/SAH nucleosidase n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VT24_CLOBI
SCNpilot_bf_inoc_scaffold_17_curated_168
unknown

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174973..176025
DNA (1053bp) protein (351aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_17_curated_169
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

176022..176648
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EK27_THECK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA59615.1}; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
SCNpilot_bf_inoc_scaffold_17_curated_170
unknown

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comp(176629..176919)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_17_curated_171
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

177013..177837
DNA (825bp) protein (275aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase n=1 Tax=Clostridium sp. BL8 RepID=T0PAZ5_9CLOT
SCNpilot_bf_inoc_scaffold_17_curated_172
Sphaerochaeta coccoides, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

177998..179605
DNA (1608bp) protein (536aa)
Oligo-1,6-glucosidase; K01182 oligo-1,6-glucosidase [EC:3.2.1.10]
Oligo-1,6-glucosidase {ECO:0000313|EMBL:AEC01993.1}; EC=3.2.1.10 {ECO:0000313|EMBL:AEC01993.1};; TaxID=760011 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1); (Spirochaeta coccoides).;"
Oligo-1,6-glucosidase n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GH94_SPICD
SCNpilot_bf_inoc_scaffold_17_curated_173
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

179617..180975
DNA (1359bp) protein (453aa)
Glycoside/pentoside/hexuronide transporter n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CJX8_9CLOT
Glycoside/pentoside/hexuronide transporter {ECO:0000313|EMBL:ERI67621.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
sugar transporter; K11104 melibiose permease rbh
SCNpilot_bf_inoc_scaffold_17_curated_174
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

181009..181950
DNA (942bp) protein (314aa)
Cation diffusion facilitator family transporter n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PRP0_CLOSD
cation diffusion facilitator family transporter (fragment)
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:CBH21544.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_17_curated_175
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(182046..183779)
DNA (1734bp) protein (578aa)
hypothetical protein n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B6FF7B
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KAJ50325.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
methyl-accepting chemotaxis protein
SCNpilot_bf_inoc_scaffold_17_curated_176
Kosmotoga olearia, Kosmotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(183922..185124)
DNA (1203bp) protein (401aa)
Major facilitator superfamily MFS_1 n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CHJ2_KOSOT
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACR79747.1}; TaxID=521045 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga.;" source="Kosmotoga olearia (strain TBF 19.5.1).;"
SCNpilot_bf_inoc_scaffold_17_curated_177
unknown

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185295..185996
DNA (702bp) protein (234aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=4 Tax=Clostridiales RepID=D4MVX8_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL39544.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
SCNpilot_bf_inoc_scaffold_17_curated_178
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

185971..187788
DNA (1818bp) protein (606aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
hypothetical protein; K00936 [EC:2.7.3.-]
Histidine kinase n=3 Tax=Desulfitobacterium hafniense RepID=B8FYN9_DESHD
SCNpilot_bf_inoc_scaffold_17_curated_179
Bacillus xiamenensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

187937..188710
DNA (774bp) protein (258aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1178537 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus xiamenensis.;"
aroD; 3-dehydroquinate dehydratase; K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Bacillus sp. HYC-10 RepID=K2NYR6_9BACI
SCNpilot_bf_inoc_scaffold_17_curated_180
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(188783..190600)
DNA (1818bp) protein (606aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae bacterium COE1 RepID=R9KJ74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS46539.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
hypothetical protein
Displaying items 151-180 of 742 in total

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