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SCNpilot_bf_inoc_scaffold_17_curated

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Displaying items 1-30 of 742 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_17_curated_1
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29..910)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKF4_ALKOO
hypothetical protein; K09116 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW20286.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_17_curated_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1120..3291
DNA (2172bp) protein (724aa)
ATP-dependent DNA helicase replicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI0003663D7B
SCNpilot_bf_inoc_scaffold_17_curated_3
Treponema lecithinolyticum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(3332..4384)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Treponema lecithinolyticum ATCC 700332 RepID=U2M3T0_TRELE
Uncharacterized protein {ECO:0000313|EMBL:ERJ93988.1}; TaxID=1321815 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema lecithinolyticum ATCC 700332.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_17_curated_4
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5055..6410
DNA (1356bp) protein (452aa)
Short chain fatty acids transporter n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CL85_9CLOT
Short chain fatty acids transporter {ECO:0000313|EMBL:EOC99455.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
short chain fatty acid transporter; K02106 short-chain fatty acids transporter
SCNpilot_bf_inoc_scaffold_17_curated_5
Amphibacillus xylanus, Amphibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6565..8928)
DNA (2364bp) protein (788aa)
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01) RepID=K0J7P3_AMPXN
ABC transporter ATP-binding protein/permease
Putative ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:BAM47718.1}; TaxID=698758 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Amphibacillus.;" source="Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG; 17667 / NBRC 15112 / Ep01).;"
SCNpilot_bf_inoc_scaffold_17_curated_6
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9104..9778
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Clostridium clostridioforme 2_1_49FAA RepID=G5HUP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23699.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
two component transcriptional regulator
SCNpilot_bf_inoc_scaffold_17_curated_7
Paenibacillus sp. oral taxon 786, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9775..10842
DNA (1068bp) protein (356aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=621372 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. oral taxon 786 str. D14.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3M1_9BACL
signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_17_curated_8
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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11133..11816
DNA (684bp) protein (228aa)
Putative uncharacterized protein id=4993670 bin=GWA2_Bacteroidetes_42_15 species=Clostridium sp. D5 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
ABC-type sugar transport system, auxiliary component
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_bf_inoc_scaffold_17_curated_9
Thermoanaerobacter siderophilus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

11835..12779
DNA (945bp) protein (315aa)
PfkB domain-containing protein; K00847 fructokinase [EC:2.7.1.4]
Sugar kinase, ribokinase n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9KRU8_9THEO
Sugar kinase, ribokinase {ECO:0000313|EMBL:EIV99515.1}; TaxID=880478 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter siderophilus SR4.;"
SCNpilot_bf_inoc_scaffold_17_curated_10
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13089..13901)
DNA (813bp) protein (271aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter related n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJH8_ALKOO
ABC transporter related {ECO:0000313|EMBL:ABW19960.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_17_curated_11
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13901..14905)
DNA (1005bp) protein (335aa)
ABC-type enterobactin transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FL53_9CLOT
ABC-type enterobactin transport system, permease component {ECO:0000313|EMBL:EMS72622.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
transporter permease; K02015 iron complex transport system permease protein
SCNpilot_bf_inoc_scaffold_17_curated_12
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14902..15924)
DNA (1023bp) protein (341aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FL34_9CLOT
Iron ABC transporter {ECO:0000313|EMBL:KJF27036.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
hypothetical protein; K02015 iron complex transport system permease protein
SCNpilot_bf_inoc_scaffold_17_curated_13
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15921..16994)
DNA (1074bp) protein (358aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FVJ8_9CLOT
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EMS72573.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_17_curated_14
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17337..18437
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI00030BBBAA
Uncharacterized protein {ECO:0000313|EMBL:EQB87698.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_17_curated_15
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18477..21164
DNA (2688bp) protein (896aa)
Small GTP-binding protein n=4 Tax=Clostridium thermocellum RepID=E6UN87_CLOTL
small GTP-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:ABN51274.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_bf_inoc_scaffold_17_curated_16
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21248..22456)
DNA (1209bp) protein (403aa)
Sugar (And other) transporter family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VRH9_CLOBI
Sugar (And other) transporter family protein {ECO:0000313|EMBL:EQK43371.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
permease
SCNpilot_bf_inoc_scaffold_17_curated_17
Enterococcus malodoratus, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22630..24135
DNA (1506bp) protein (502aa)
AraC family transcriptional regulator; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Uncharacterized protein n=1 Tax=Enterococcus malodoratus ATCC 43197 RepID=R2QWI5_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOH72821.1}; TaxID=1158601 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus malodoratus ATCC 43197.;"
SCNpilot_bf_inoc_scaffold_17_curated_18
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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24119..24811
DNA (693bp) protein (231aa)
O-6-methylguanine DNA methyltransferase n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5G206_9ACTN
O-6-methylguanine DNA methyltransferase {ECO:0000313|EMBL:CCY06491.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
methylated-DNA--protein-cysteine methyltransferase
SCNpilot_bf_inoc_scaffold_17_curated_19
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24918..25628
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BS39_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR19964.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_17_curated_20
Streptococcus pneumoniae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25775..26575)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Bacillus cereus HuA2-1 RepID=J9B583_BACCE
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1313 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus pneumoniae.;"
ABC-2 type transporter
SCNpilot_bf_inoc_scaffold_17_curated_21
Gemella haemolysans, Gemella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26575..27354)
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Gemella haemolysans M341 RepID=F3A1S3_9BACL
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=562981 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XI. Incertae Sedis; Gemella.;" source="Gemella haemolysans M341.;"
ABC-2 type transporter; K09686 antibiotic transport system permease protein
SCNpilot_bf_inoc_scaffold_17_curated_22
Gemella haemolysans, Gemella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27366..28163)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Gemella haemolysans M341 RepID=F3A1S4_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EGF85625.1}; TaxID=562981 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XI. Incertae Sedis; Gemella.;" source="Gemella haemolysans M341.;"
ABC transporter; K09687 antibiotic transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_17_curated_23
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(28399..29400)
DNA (1002bp) protein (334aa)
Regulatory protein ArsR id=1779024 bin=GWB2_Clostridiales_37_7 species=Ethanoligenens harbinense genus=Ethanoligenens taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
regulatory protein ArsR
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_17_curated_24
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29520..29765
DNA (246bp) protein (82aa)
DNA-binding protein n=1 Tax=Blautia producta RepID=UPI00037FFDB9
XRE family transcriptional regulator; K07729 putative transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ADL03143.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
SCNpilot_bf_inoc_scaffold_17_curated_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29755..30207
DNA (453bp) protein (151aa)
def1; peptide deformylase 1; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Peptide deformylase n=51 Tax=Clostridium difficile RepID=G6BXR9_CLODI
SCNpilot_bf_inoc_scaffold_17_curated_26
Mesotoga prima, Mesotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

30224..30652
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Mesotoga prima MesG1.Ag.4.2 RepID=I2F873_9THEM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK08126.1}; TaxID=660470 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Mesotoga.;" source="Mesotoga prima MesG1.Ag.4.2.;"
SCNpilot_bf_inoc_scaffold_17_curated_27
unknown

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30844..31059
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_17_curated_28
Halanaerobium saccharolyticum, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31216..33594
DNA (2379bp) protein (793aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5EFX6_9FIRM
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU80133.1}; TaxID=1293054 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643.;"
diguanylate cyclase/phosphodiesterase with extracellular sensor
SCNpilot_bf_inoc_scaffold_17_curated_29
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33663..34286
DNA (624bp) protein (208aa)
Bacterial regulatory s, tetR family protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0E5P5_CLOSO
TetR family transcriptional regulator {ECO:0000313|EMBL:KGK82246.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_17_curated_30
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34303..35295
DNA (993bp) protein (331aa)
ABC-type Co2+ transport system, permease component n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M2M4_CLOCD
ABC-type Co2+ transport system, permease component; K02007 cobalt/nickel transport system permease protein
ABC-type Co2+ transport system, permease component {ECO:0000313|EMBL:AEV67098.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Displaying items 1-30 of 742 in total

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