ggKbase home page

SCNpilot_bf_inoc_scaffold_437_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_437_curated_1
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2132)
DNA (2130bp) protein (710aa)
putative AMP-dependent synthetase and ligase (EC:5.1.1.11)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D89251
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_437_curated_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2129..9271)
DNA (7143bp) protein (2381aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003728266
Thioester reductase {ECO:0000313|EMBL:AIF48395.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
amino acid adenylation protein
SCNpilot_bf_inoc_scaffold_437_curated_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9278..10201)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B3A1F4
Uncharacterized protein {ECO:0000313|EMBL:AHX16314.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
transcription factor jumonji/aspartyl beta-hydroxylase
SCNpilot_bf_inoc_scaffold_437_curated_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10369..11430
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVT2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91323.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_bf_inoc_scaffold_437_curated_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11559..12110)
DNA (552bp) protein (184aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVV7_9GAMM
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIL91348.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
N-acetyltransferase GCN5
SCNpilot_bf_inoc_scaffold_437_curated_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12115..12840)
DNA (726bp) protein (242aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVV8_9GAMM
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIL91349.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
N-acetyltransferase GCN5
SCNpilot_bf_inoc_scaffold_437_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12917..15799)
DNA (2883bp) protein (961aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVV9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91350.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_437_curated_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15855..17258)
DNA (1404bp) protein (468aa)
Undecaprenyl-phosphate galactosephosphotransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVW0_9GAMM
Undecaprenyl-phosphate galactosephosphotransferase {ECO:0000313|EMBL:EIL91351.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
SCNpilot_bf_inoc_scaffold_437_curated_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17517..18569)
DNA (1053bp) protein (351aa)
Vi polysaccharide biosynthesis protein vipB/tviC n=1 Tax=Dyella ginsengisoli RepID=UPI00034C4BA2
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EIL91353.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
nucleoside-diphosphate-sugar epimerase
SCNpilot_bf_inoc_scaffold_437_curated_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18569..19846)
DNA (1278bp) protein (426aa)
Capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVW3_9GAMM
Capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein {ECO:0000313|EMBL:EIL91354.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
nucleotide sugar dehydrogenase
SCNpilot_bf_inoc_scaffold_437_curated_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20092..21408)
DNA (1317bp) protein (439aa)
Threonine synthase {ECO:0000313|EMBL:EIL97130.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EIL97130.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Threonine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD9_9GAMM
threonine synthase
SCNpilot_bf_inoc_scaffold_437_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21405..22403)
DNA (999bp) protein (333aa)
homoserine kinase (EC:2.7.1.39)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Homoserine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NM15_9GAMM
SCNpilot_bf_inoc_scaffold_437_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22400..23557)
DNA (1158bp) protein (386aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD7_9GAMM
SCNpilot_bf_inoc_scaffold_437_curated_14
unknown

Not on your lists

comp(23649..23813)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_437_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23966..24700
DNA (735bp) protein (245aa)
Cytochrome c n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY6_9GAMM
Cytochrome c {ECO:0000313|EMBL:EIL92077.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c553
SCNpilot_bf_inoc_scaffold_437_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24697..25980
DNA (1284bp) protein (428aa)
Cytochrome c, class I n=1 Tax=Rhodanobacter denitrificans RepID=I4WKA4_9GAMM
cytochrome c, mono- and diheme variants family
Cytochrome c, mono-and diheme variants family {ECO:0000313|EMBL:AGG90704.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_437_curated_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26052..26516
DNA (465bp) protein (155aa)
DNA-(apurinic or apyrimidinic site) lyase / pyrimidine dimer DNA glycosylase (EC:3.2.2.17 4.2.99.18)
Pyrimidine dimer DNA glycosylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKJ9_9GAMM
Pyrimidine dimer DNA glycosylase {ECO:0000313|EMBL:EIL87740.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_bf_inoc_scaffold_437_curated_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26517..27728)
DNA (1212bp) protein (404aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4R4_9GAMM
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL94455.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
major facilitator superfamily transporter
SCNpilot_bf_inoc_scaffold_437_curated_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27823..29817)
DNA (1995bp) protein (665aa)
5'-nucleotidase domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQM4_9GAMM
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase
5'-nucleotidase domain-containing protein {ECO:0000313|EMBL:EIL89515.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_437_curated_20

Not on your lists

30192..30482
DNA (291bp) protein (97aa)
Plasmid stability protein n=2 Tax=mine drainage metagenome RepID=T1AFA1_9ZZZZ
Plasmid stability protein {ECO:0000313|EMBL:EQD59166.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
plasmid stability protein
SCNpilot_bf_inoc_scaffold_437_curated_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30835..33063
DNA (2229bp) protein (743aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:AHX14950.1}; EC=1.1.1.42 {ECO:0000313|EMBL:AHX14950.1};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
isocitrate dehydrogenase, NADP-dependent (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJN7_9GAMM
SCNpilot_bf_inoc_scaffold_437_curated_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33513..34610
DNA (1098bp) protein (366aa)
GumN protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJN6_9GAMM
GumN protein {ECO:0000313|EMBL:EIL87427.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
GumN protein
SCNpilot_bf_inoc_scaffold_437_curated_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34611..35558)
DNA (948bp) protein (316aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P8_9GAMM
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EIL93739.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative oxidoreductase, aryl-alcohol dehydrogenase like protein
SCNpilot_bf_inoc_scaffold_437_curated_24
unknown

Not on your lists

comp(35660..35869)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_437_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35972..36892
DNA (921bp) protein (307aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WMS4_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL98162.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_437_curated_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36976..37638
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2Q2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93743.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_437_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37715..38563
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMS1_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG90790.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_437_curated_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38589..39125
DNA (537bp) protein (179aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pseudouridine synthase family protein (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WPY1_9GAMM
SCNpilot_bf_inoc_scaffold_437_curated_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39295..40116)
DNA (822bp) protein (274aa)
Mg-dependent DNase (EC:3.1.21.-)
Mg-dependent DNase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPJ3_9GAMM
Mg-dependent DNase {ECO:0000313|EMBL:EIL89134.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_bf_inoc_scaffold_437_curated_30
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40458..42437
DNA (1980bp) protein (660aa)
Subtilisin-like serine protease; K14645 serine protease [EC:3.4.21.-]
Protease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPJ2_9GAMM
Protease {ECO:0000313|EMBL:EIL89133.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Displaying items 1-30 of 31 in total

View Taxonomy