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SCNpilot_bf_inoc_scaffold_197_curated

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Displaying items 1-30 of 162 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_197_curated_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(912..4496)
DNA (3585bp) protein (1195aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMM4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88465.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
aminopeptidase N
SCNpilot_bf_inoc_scaffold_197_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4521..5405)
DNA (885bp) protein (295aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W226_9GAMM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EIL93517.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type multidrug transport system, ATPase component
SCNpilot_bf_inoc_scaffold_197_curated_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5649..7337
DNA (1689bp) protein (563aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
dihydrolipoamide acetyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000346BB38
SCNpilot_bf_inoc_scaffold_197_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7428..9284
DNA (1857bp) protein (619aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoamide dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY5_9GAMM
SCNpilot_bf_inoc_scaffold_197_curated_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9466..9891)
DNA (426bp) protein (142aa)
Organic hydroperoxide resistance protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHR7_9GAMM
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:EIL99008.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
peroxiredoxin, Ohr subfamily
SCNpilot_bf_inoc_scaffold_197_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10021..10479)
DNA (459bp) protein (153aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHR6_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:EIL99007.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ohrR; organic hydroperoxide resistance transcriptional regulator
SCNpilot_bf_inoc_scaffold_197_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10591..11391
DNA (801bp) protein (267aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|SAAS:SAAS00018107}; EC=1.17.1.8 {ECO:0000256|SAAS:SAAS00018107};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY4_9GAMM
SCNpilot_bf_inoc_scaffold_197_curated_8
unknown

Not on your lists

11681..11794
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_197_curated_9
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11881..12321
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BYV4_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL62249.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_197_curated_10
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12433..12909
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UUA8_PSEUP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AER54997.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_bf_inoc_scaffold_197_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13166..13633)
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NHV6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90515.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_197_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13630..14205)
DNA (576bp) protein (192aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodanobacter denitrificans RepID=M4NI09_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG90514.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_197_curated_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14326..14652
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHR8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99009.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_197_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14719..14985)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDX9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97670.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_197_curated_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15110..16162)
DNA (1053bp) protein (351aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
DNA polymerase IV n=1 Tax=Dyella japonica RepID=UPI0002DD34EC
nucleotidyltransferase/DNA polymerase involved in DNA repair
SCNpilot_bf_inoc_scaffold_197_curated_16
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16264..17013
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBY5_9RHIZ
Membrane protein {ECO:0000313|EMBL:KIF65909.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_197_curated_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17013..17219
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRK9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02101.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_197_curated_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17230..17559)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02106.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_197_curated_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17677..19008
DNA (1332bp) protein (444aa)
Amino acid transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL5_9GAMM
Amino acid transporter {ECO:0000313|EMBL:EIM02107.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid transporter
SCNpilot_bf_inoc_scaffold_197_curated_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19118..21196
DNA (2079bp) protein (693aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02108.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_197_curated_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21117..22340)
DNA (1224bp) protein (408aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL7_9GAMM
Major facilitator superfamily protein {ECO:0000313|EMBL:EIM02109.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
major facilitator superfamily protein
SCNpilot_bf_inoc_scaffold_197_curated_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22435..23358
DNA (924bp) protein (308aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL8_9GAMM
LysR family transcriptional regulator {ECO:0000313|EMBL:EIM02110.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LysR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_197_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23362..24138
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX81_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90587.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_197_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24233..25918
DNA (1686bp) protein (562aa)
DNA ligase B {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019096}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019091};; Polydeoxyribonucleotide synthase [NAD(+)] B {ECO:0000256|HAMAP-Rule:MF_01587}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA ligase B n=1 Tax=Rhodanobacter denitrificans RepID=M4NSW7_9GAMM
NAD-dependent DNA ligase
SCNpilot_bf_inoc_scaffold_197_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25928..26332)
DNA (405bp) protein (135aa)
UPF0225 protein UUA_01469 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTB7_9GAMM
UPF0225 protein UUA_01469 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_197_curated_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26370..26966)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX78_9GAMM
putative S-adenosylmethionine-dependent methyltransferase
Putative S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AGG90584.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_197_curated_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26977..27174)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIV2_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_197_curated_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27268..27846)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034671D5
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_197_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27919..28470)
DNA (552bp) protein (184aa)
Histidine utilization protein HutD n=1 Tax=Rhodanobacter denitrificans RepID=I4WX75_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90581.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_197_curated_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28467..30584)
DNA (2118bp) protein (706aa)
ATP-dependent DNA helicase DinG n=1 Tax=Rhodanobacter denitrificans RepID=I4WX74_9GAMM
DNA helicase, Rad3
DNA helicase, Rad3 {ECO:0000313|EMBL:AGG90580.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 162 in total

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