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SCNpilot_bf_inoc_scaffold_122_curated

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Displaying items 1-30 of 413 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_122_curated_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..347)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F389DF
Flagellar motor protein MotB {ECO:0000313|EMBL:AIF48649.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
outer membrane protein/peptidoglycan-associated (lipo)protein
SCNpilot_bf_inoc_scaffold_122_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(532..1983)
DNA (1452bp) protein (484aa)
2-methylcitrate dehydratase {ECO:0000313|EMBL:EIL99394.1}; EC=4.2.1.79 {ECO:0000313|EMBL:EIL99394.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV3_9GAMM
SCNpilot_bf_inoc_scaffold_122_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2266..2946
DNA (681bp) protein (227aa)
Integral membrane protein, terc family n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2R5_9GAMM
Integral membrane protein, terc family {ECO:0000313|EMBL:EIL93756.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
integral membrane protein, YjbE family
SCNpilot_bf_inoc_scaffold_122_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3010..4155)
DNA (1146bp) protein (382aa)
Citrate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV5_9GAMM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-methylcitrate synthase/citrate synthase II
SCNpilot_bf_inoc_scaffold_122_curated_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4220..5107)
DNA (888bp) protein (296aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
methylisocitrate lyase (EC:4.1.3.30)
2-methylisocitrate lyase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHY4_9GAMM
SCNpilot_bf_inoc_scaffold_122_curated_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5283..6500
DNA (1218bp) protein (406aa)
citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GV96_XANCT
Citrate synthase {ECO:0000313|EMBL:AHX13918.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_122_curated_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6673..7236
DNA (564bp) protein (188aa)
Alkyl hydroperoxide reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WV93_9GAMM
peroxiredoxin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_122_curated_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7418..9004
DNA (1587bp) protein (529aa)
Alkyl hydroperoxide reductase subunit F n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDC9_9GAMM
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:EIL97470.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
alkyl hydroperoxide reductase, F subunit
SCNpilot_bf_inoc_scaffold_122_curated_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9117..11006)
DNA (1890bp) protein (630aa)
Propionyl-CoA synthetase {ECO:0000313|EMBL:EIL97469.1}; EC=6.2.1.17 {ECO:0000313|EMBL:EIL97469.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
propionyl-CoA synthetase (EC:6.2.1.17)
Propionyl-CoA synthetase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDC8_9GAMM
SCNpilot_bf_inoc_scaffold_122_curated_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11247..12035)
DNA (789bp) protein (263aa)
Putative lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W636_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX14028.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
putative lipoprotein
SCNpilot_bf_inoc_scaffold_122_curated_11
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12171..13154)
DNA (984bp) protein (328aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
malate dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0002FC2B3F
malate dehydrogenase
SCNpilot_bf_inoc_scaffold_122_curated_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13212..14411)
DNA (1200bp) protein (400aa)
Class I and II aminotransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDC5_9GAMM
Class I and II aminotransferase {ECO:0000313|EMBL:EIL97466.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
aspartate/tyrosine/aromatic aminotransferase
SCNpilot_bf_inoc_scaffold_122_curated_13
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14665..14922
DNA (258bp) protein (86aa)
Putative membrane protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L419_FRAAD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AFC85613.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_bf_inoc_scaffold_122_curated_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14999..15409)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000300AA55
Uncharacterized protein {ECO:0000313|EMBL:AHX13925.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_122_curated_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15555..16064)
DNA (510bp) protein (170aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
peptidylprolyl isomerase n=1 Tax=Dyella japonica RepID=UPI00031E42C0
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
SCNpilot_bf_inoc_scaffold_122_curated_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16169..17920)
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003819199
Hydrogenase {ECO:0000313|EMBL:KGI77418.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
3HB-oligomer hydrolase (3HBOH)
SCNpilot_bf_inoc_scaffold_122_curated_17
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18130..18789
DNA (660bp) protein (220aa)
LuxR family transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI0002D25B4B
LuxR family transcriptional regulator {ECO:0000313|EMBL:KGI77374.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_bf_inoc_scaffold_122_curated_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18793..22113)
DNA (3321bp) protein (1107aa)
Putative two component regulator sensor histidine kinase/response regulator fusion transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WVA3_9GAMM
Histidine kinase {ECO:0000313|EMBL:KGI77375.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_122_curated_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22822..23847)
DNA (1026bp) protein (342aa)
Poly (3-hydroxybutyrate) depolymerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVA4_9GAMM
Poly (3-hydroxybutyrate) depolymerase {ECO:0000313|EMBL:EIL91453.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative esterase
SCNpilot_bf_inoc_scaffold_122_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23882..26107)
DNA (2226bp) protein (742aa)
Outer membrane receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4ND64_9GAMM
Outer membrane receptor protein {ECO:0000313|EMBL:AGG88675.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
outer membrane receptor protein
SCNpilot_bf_inoc_scaffold_122_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26276..27673
DNA (1398bp) protein (466aa)
H+/gluconate symporter family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4ND96_9GAMM
H+/gluconate symporter family protein
H+/gluconate symporter family protein {ECO:0000313|EMBL:AGG88674.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_122_curated_22
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27873..29699
DNA (1827bp) protein (609aa)
GTP-binding protein TypA/BipA n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L415_FRAAD
GTP-binding protein TypA/BipA; K06207 GTP-binding protein
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:AFC85609.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_bf_inoc_scaffold_122_curated_23
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30406..31530
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FDDBD5
Secretion protein HylD {ECO:0000313|EMBL:AIF46679.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
RND family efflux transporter, MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_bf_inoc_scaffold_122_curated_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31523..34636
DNA (3114bp) protein (1038aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F04BB1
Membrane protein {ECO:0000313|EMBL:AIF46680.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
czcA; cobalt-zinc-cadmium resistance protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_bf_inoc_scaffold_122_curated_25
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34685..36166
DNA (1482bp) protein (494aa)
Heavy metal cation tricomponent efflux outer membrane porin ZneC (CzcC-like) n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LCD9_RALME
zneC; heavy metal cation tricomponent efflux outer membrane porin ZneC
Heavy metal cation tricomponent efflux outer membrane porin ZneC (CzcC-like) {ECO:0000313|EMBL:ABF12187.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_bf_inoc_scaffold_122_curated_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36208..37536
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EA92A4
Porin {ECO:0000313|EMBL:AHX13934.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Carbohydrate-selective porin OprB
SCNpilot_bf_inoc_scaffold_122_curated_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38544..39152)
DNA (609bp) protein (203aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMD1_9GAMM
methyltransferase family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_122_curated_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39325..40917
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDB3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97454.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_122_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41154..42353
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX57_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87423.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_122_curated_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42385..42663
DNA (279bp) protein (93aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKI7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87728.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Displaying items 1-30 of 413 in total

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