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SCNpilot_bf_inoc_scaffold_1923_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1923_curated_1
unknown

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comp(127..393)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1923_curated_2
Streptomyces sp. NRRL S-104, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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639..878
DNA (240bp) protein (80aa)
C4-dicarboxylate anaerobic carrier n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3BM12_STRMB
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KJY19485.1}; TaxID=1609135 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-104.;"
C4-dicarboxylate anaerobic carrier
SCNpilot_bf_inoc_scaffold_1923_curated_3
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

907..2130
DNA (1224bp) protein (408aa)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
arginine deiminase (EC:3.5.3.6); K01478 arginine deiminase [EC:3.5.3.6]
arginine deiminase n=1 Tax=Patulibacter americanus RepID=UPI0003B57CB2
SCNpilot_bf_inoc_scaffold_1923_curated_4
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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2665..4518
DNA (1854bp) protein (618aa)
heavy metal translocating P-type ATPase; K01552 [EC:3.6.3.-]
Heavy metal translocating P-type ATPase n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YAZ5_THEBD
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ADG88362.1}; Flags: Precursor;; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
SCNpilot_bf_inoc_scaffold_1923_curated_5
unknown

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comp(4490..4714)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1923_curated_6
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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5113..6579
DNA (1467bp) protein (489aa)
Lysine/cadaverine antiporter membrane protein CadB n=1 Tax=Patulibacter medicamentivorans RepID=H0E1B0_9ACTN
Lysine/cadaverine antiporter membrane protein CadB {ECO:0000313|EMBL:EHN12549.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
adiC-A; arginine/agmatine antiporter; K03759 arginine:agmatine antiporter
SCNpilot_bf_inoc_scaffold_1923_curated_7
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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6633..9368
DNA (2736bp) protein (912aa)
ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARJ4_RUBXD
P type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase
ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter {ECO:0000313|EMBL:ABG05984.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SCNpilot_bf_inoc_scaffold_1923_curated_8
unknown

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comp(10331..10441)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1923_curated_9
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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10623..12071
DNA (1449bp) protein (483aa)
Mg(2+) transport ATPase, P-type; K01531 Mg2+-importing ATPase [EC:3.6.3.2]
Uncharacterized protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KQS2_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST34368.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
SCNpilot_bf_inoc_scaffold_1923_curated_10
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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12107..12586
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI0003624A53
MFS transporter {ECO:0000313|EMBL:KDE98874.1}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
Drug resistance transporter EmrB/QacA subfamily
SCNpilot_bf_inoc_scaffold_1923_curated_11
Gordonia soli, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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12586..13863
DNA (1278bp) protein (426aa)
Putative major facilitator superfamily transporter n=1 Tax=Gordonia soli NBRC 108243 RepID=M0QPE0_9ACTO
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAC70535.1}; TaxID=1223545 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia soli NBRC 108243.;"
putative major facilitator superfamily transporter
SCNpilot_bf_inoc_scaffold_1923_curated_12
Synechococcus sp. WH 5701, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(13873..14457)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YVX2_9SYNE
Uncharacterized protein {ECO:0000313|EMBL:EAQ76284.1}; TaxID=69042 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. WH 5701.;"
SCNpilot_bf_inoc_scaffold_1923_curated_13
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

14607..15416
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B574DF
UspA {ECO:0000313|EMBL:EHN10573.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
UspA domain-containing protein
SCNpilot_bf_inoc_scaffold_1923_curated_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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15418..16209
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B574DF
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ADB49375.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1923_curated_15
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16040..17143)
DNA (1104bp) protein (368aa)
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_bf_inoc_scaffold_1923_curated_16
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

17664..18311
DNA (648bp) protein (216aa)
phosphoketolase (EC:4.1.2.9)
Phosphoketolase {ECO:0000313|EMBL:ADB53396.1}; EC=4.1.2.9 {ECO:0000313|EMBL:ADB53396.1};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Phosphoketolase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCA1_CONWI
SCNpilot_bf_inoc_scaffold_1923_curated_17
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

18290..18484
DNA (195bp) protein (65aa)
phosphoketolase (EC:4.1.2.9)
Phosphoketolase {ECO:0000313|EMBL:ADB53396.1}; EC=4.1.2.9 {ECO:0000313|EMBL:ADB53396.1};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Phosphoketolase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCA1_CONWI
SCNpilot_bf_inoc_scaffold_1923_curated_18
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18481..19590
DNA (1110bp) protein (370aa)
acetate kinase; K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Acetate kinase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJV9_PSEUX
SCNpilot_bf_inoc_scaffold_1923_curated_19
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19667..20008)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CEL9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ42062.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein; K09959 hypothetical protein
SCNpilot_bf_inoc_scaffold_1923_curated_20
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20040..21584)
DNA (1545bp) protein (515aa)
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:KDA42175.1}; EC=1.2.1.3 {ECO:0000313|EMBL:KDA42175.1};; TaxID=683305 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
aldehyde dehydrogenase (EC:1.2.1.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Streptomyces acidiscabies RepID=UPI0002895E5A
SCNpilot_bf_inoc_scaffold_1923_curated_21
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(21703..22770)
DNA (1068bp) protein (356aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:EHN12519.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EHN12519.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
alcohol dehydrogenase (EC:1.1.1.1); K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
alcohol dehydrogenase n=1 Tax=Patulibacter americanus RepID=UPI0003B3C2EC
SCNpilot_bf_inoc_scaffold_1923_curated_22
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22934..24274)
DNA (1341bp) protein (447aa)
Putative phosphoribosyl transferase n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S3ZL98_9ACTO
Putative phosphoribosyl transferase {ECO:0000313|EMBL:EPH44306.1}; TaxID=1286094 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1923_curated_23
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24349..25227)
DNA (879bp) protein (293aa)
DNA polymerase LigD, polymerase domain protein n=1 Tax=Mycobacterium smegmatis JS623 RepID=L0IW75_MYCSM
DNA polymerase LigD, polymerase domain protein
DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:AGB23359.1}; TaxID=710686 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis JS623.;"
SCNpilot_bf_inoc_scaffold_1923_curated_24
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25258..26343)
DNA (1086bp) protein (362aa)
Glutamate synthase family protein {ECO:0000313|EMBL:CCG03895.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CCG03895.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Glutamate synthase family protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RNE8_BLASD
glutamate synthase family protein
SCNpilot_bf_inoc_scaffold_1923_curated_25
unknown

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comp(26912..26983)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 25 items

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