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SCNpilot_bf_inoc_scaffold_8082_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_8082_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..286
DNA (285bp) protein (95aa)
Zn-dependent protease protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MHH6_RHISN
Zn-dependent protease protein; K03568 TldD protein
Zn-dependent protease protein {ECO:0000313|EMBL:ACP24304.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_bf_inoc_scaffold_8082_curated_2
unknown

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comp(372..461)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_8082_curated_3
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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540..1595
DNA (1056bp) protein (352aa)
C69 family peptidase; K03592 PmbA protein id=24569316 bin=RBG_19FT_COMBO_GAL15_69_19 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
peptidase U62 modulator of DNA gyrase; K03592 PmbA protein
Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:ACX51808.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
SCNpilot_bf_inoc_scaffold_8082_curated_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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1731..2012
DNA (282bp) protein (94aa)
Histone family protein DNA-binding protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F316_CONWI
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ADB50296.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_8082_curated_5
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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2055..2693
DNA (639bp) protein (213aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=1 Tax=Patulibacter medicamentivorans RepID=H0E0H0_9ACTN
SCNpilot_bf_inoc_scaffold_8082_curated_6
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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2645..2884
DNA (240bp) protein (80aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=1 Tax=Patulibacter medicamentivorans RepID=H0E0H0_9ACTN
SCNpilot_bf_inoc_scaffold_8082_curated_7

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2969..3295
DNA (327bp) protein (109aa)
Peptidoglycan-binding lysin domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F317_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKL44799.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidoglycan-binding lysin domain protein
SCNpilot_bf_inoc_scaffold_8082_curated_8
unknown

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comp(3157..3438)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_8082_curated_9
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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4094..4576
DNA (483bp) protein (161aa)
Serine-type D-Ala-D-Ala carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ABG05227.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ABG05227.1};; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATQ1_RUBXD
SCNpilot_bf_inoc_scaffold_8082_curated_10
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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4573..5529
DNA (957bp) protein (319aa)
1-phosphofructokinase; K00882 1-phosphofructokinase [EC:2.7.1.56]
1-phosphofructokinase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F319_CONWI
1-phosphofructokinase {ECO:0000313|EMBL:ADB50299.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_8082_curated_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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5566..6771
DNA (1206bp) protein (402aa)
IMP dehydrogenase family protein; K00088 IMP dehydrogenase [EC:1.1.1.205]
IMP dehydrogenase family protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F320_CONWI
IMP dehydrogenase family protein {ECO:0000313|EMBL:ADB50300.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_8082_curated_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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6764..7231
DNA (468bp) protein (156aa)
GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID13
GMP synthase n=1 Tax=Patulibacter americanus RepID=UPI0003B6ED5A
SCNpilot_bf_inoc_scaffold_8082_curated_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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7228..8292
DNA (1065bp) protein (355aa)
GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID13
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F321_CONWI
SCNpilot_bf_inoc_scaffold_8082_curated_14
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8612..9451)
DNA (840bp) protein (280aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00035D2918
Prolipoprotein diacylglyceryl transferase
SCNpilot_bf_inoc_scaffold_8082_curated_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(9463..10596)
DNA (1134bp) protein (378aa)
Cobalamin synthesis protein P47K n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZY5_CONWI
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ADB49961.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying 15 items

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