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SCNpilot_bf_inoc_scaffold_1909_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1909_curated_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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551..781
DNA (231bp) protein (77aa)
Carbon-monoxide dehydrogenase (Acceptor) {ECO:0000313|EMBL:AEA24466.1}; EC=1.2.99.2 {ECO:0000313|EMBL:AEA24466.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Carbon-monoxide dehydrogenase (Acceptor) n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPG8_PSEUX
carbon-monoxide dehydrogenase
SCNpilot_bf_inoc_scaffold_1909_curated_2
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

982..2313
DNA (1332bp) protein (444aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EHN10710.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EHN10710.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
AMP-dependent synthetase and ligase; K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]
Long-chain-fatty-acid--CoA ligase n=1 Tax=Patulibacter medicamentivorans RepID=H0E6G9_9ACTN
SCNpilot_bf_inoc_scaffold_1909_curated_3
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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2310..3299
DNA (990bp) protein (330aa)
Acetoin dehydrogenase E1 component alpha-subunit {ECO:0000313|EMBL:EHN10711.1}; EC=1.2.4.- {ECO:0000313|EMBL:EHN10711.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
pyruvate dehydrogenase (acetyl-transferring) (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Acetoin dehydrogenase E1 component alpha-subunit n=1 Tax=Patulibacter medicamentivorans RepID=H0E6H0_9ACTN
SCNpilot_bf_inoc_scaffold_1909_curated_4
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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3272..4192
DNA (921bp) protein (307aa)
Branched-chain alpha-keto acid dehydrogenase E1 component beta subunit {ECO:0000313|EMBL:EHN10712.1}; EC=1.2.4.4 {ECO:0000313|EMBL:EHN10712.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
transketolase; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Branched-chain alpha-keto acid dehydrogenase E1 component beta subunit n=1 Tax=Patulibacter medicamentivorans RepID=H0E6H1_9ACTN
SCNpilot_bf_inoc_scaffold_1909_curated_5
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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4216..4863
DNA (648bp) protein (216aa)
carbon monoxide dehydrogenase subunit G n=1 Tax=Frankia sp. BCU110501 RepID=UPI00037A387E
carbon monoxide dehydrogenase subunit G; K09386 hypothetical protein
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:ABW12618.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_bf_inoc_scaffold_1909_curated_6
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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4848..5717
DNA (870bp) protein (290aa)
ATPase associated with various cellular activities AAA_5 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4R6_CONWI
ATPase
ATPase associated with various cellular activities AAA_5 {ECO:0000313|EMBL:ADB52523.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1909_curated_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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5710..6861
DNA (1152bp) protein (384aa)
VWA containing CoxE family protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4R5_CONWI
VWA containing CoxE family protein
VWA containing CoxE family protein {ECO:0000313|EMBL:ADB52522.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1909_curated_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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7251..8033
DNA (783bp) protein (261aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3I9_CONWI
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADB52354.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1909_curated_9
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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8059..8985
DNA (927bp) protein (309aa)
Peptidase S15 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3I8_CONWI
peptidase S15
Peptidase S15 {ECO:0000313|EMBL:ADB52353.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1909_curated_10
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8995..9789
DNA (795bp) protein (265aa)
Putative oxidoreductase, short-chain dehydrogenase/reductase n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q140Z3_BURXL
oxidoreductase, short-chain dehydrogenase/reductase
Putative oxidoreductase, short-chain dehydrogenase/reductase {ECO:0000313|EMBL:ABE30096.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_bf_inoc_scaffold_1909_curated_11
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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9935..11188
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI000364A3F5
Xylose ABC transporter, periplasmic xylose-binding protein XylF {ECO:0000313|EMBL:AIY16679.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
sugar ABC transporter periplasmatic substrate-binding protein
SCNpilot_bf_inoc_scaffold_1909_curated_12
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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11246..11989
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037EC1D8
Various polyols ABC transporter, ATP-binding component {ECO:0000313|EMBL:AIY16678.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
ABC transporter ATP-binding protein
SCNpilot_bf_inoc_scaffold_1909_curated_13
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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11986..13224
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI000362E78F
Xylose ABC transporter, permease protein XylH {ECO:0000313|EMBL:AIY19785.2}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
sugar ABC transporter permease protein
SCNpilot_bf_inoc_scaffold_1909_curated_14
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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13301..13687
DNA (387bp) protein (129aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4GNX7_9EURY
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ESP87096.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobonum tyrrellensis G22.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_bf_inoc_scaffold_1909_curated_15
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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13684..14055
DNA (372bp) protein (124aa)
2-R-hydroxypropyl-CoM dehydrogenase n=1 Tax=Rhodococcus sp. 29MFTsu3.1 RepID=UPI0003649D52
Putative oxidoreductase yxbG {ECO:0000313|EMBL:AHK34279.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
oxidoreductase
SCNpilot_bf_inoc_scaffold_1909_curated_16
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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14621..16336
DNA (1716bp) protein (572aa)
fumarate reductase n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002629082
Uncharacterized protein {ECO:0000313|EMBL:GAF46524.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
SCNpilot_bf_inoc_scaffold_1909_curated_17
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(16406..16951)
DNA (546bp) protein (182aa)
Transcriptional regulator XRE family with cupin sensor n=1 Tax=Patulibacter medicamentivorans RepID=H0E6H9_9ACTN
Transcriptional regulator XRE family with cupin sensor {ECO:0000313|EMBL:EHN10720.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
XRE family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1909_curated_18
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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17169..18230
DNA (1062bp) protein (354aa)
Ribose ABC transporter, permease protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGW1_9RHOB
Ribose transport system permease protein rbsC {ECO:0000313|EMBL:KJF19278.1}; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_bf_inoc_scaffold_1909_curated_19
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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18202..19551
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036653DB
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:KJF19279.1}; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
ABC-type sugar transporter periplasmic component-like protein
SCNpilot_bf_inoc_scaffold_1909_curated_20
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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19567..22194
DNA (2628bp) protein (876aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:KJF19280.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KJF19280.1};; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035D2E57
ABC transporter ATP-binding protein/permease
SCNpilot_bf_inoc_scaffold_1909_curated_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

22221..23333
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2L9_CONWI
hypothetical protein; K07402 xanthine dehydrogenase accessory factor
Uncharacterized protein {ECO:0000313|EMBL:ADB52285.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1909_curated_22
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(23330..24127)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B5DB69
ABC-type multidrug transport system permease component {ECO:0000313|EMBL:AHY47395.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
putative multidrug ABC transporter permease protein
SCNpilot_bf_inoc_scaffold_1909_curated_23
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(24124..24903)
DNA (780bp) protein (260aa)
Putative multidrug ABC transporter permease protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A3S0_9ACTN
putative multidrug ABC transporter permease protein
Tax=RBG_16_Actinobacteria_68_12_curated
SCNpilot_bf_inoc_scaffold_1909_curated_24
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(24900..25937)
DNA (1038bp) protein (346aa)
Multidrug ABC transporter ATP-binding protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A4W0_9ACTN
DrrA: daunorubicin resistance ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AHY47397.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
multidrug ABC transporter ATP-binding protein
SCNpilot_bf_inoc_scaffold_1909_curated_25
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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25994..26452
DNA (459bp) protein (153aa)
MarR family transcriptional regulator id=12554322 bin=CNBR_ACIDO species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
MarR-type regular protein {ECO:0000313|EMBL:EAU65002.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
MarR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1909_curated_26
Mycobacterium gastri, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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26468..26884
DNA (417bp) protein (139aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW21110.1}; TaxID=1436723 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium gastri 'Wayne'.;"
SCNpilot_bf_inoc_scaffold_1909_curated_27
unknown

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27570..28283
DNA (714bp) protein (238aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1909_curated_28
unknown

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comp(28322..28426)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1909_curated_29
unknown

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28494..29243
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1909_curated_30
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(29259..31142)
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F322_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50302.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying items 1-30 of 36 in total

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