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SCNpilot_bf_inoc_scaffold_1285_curated

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1285_curated_1
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..557)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGV9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR51826.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
SCNpilot_bf_inoc_scaffold_1285_curated_2
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(606..1619)
DNA (1014bp) protein (338aa)
Ribose ABC transporter, permease protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGW1_9RHOB
Ribose transport system permease protein rbsC {ECO:0000313|EMBL:KJF19278.1}; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
inner-membrane translocator
SCNpilot_bf_inoc_scaffold_1285_curated_3
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1897..2622
DNA (726bp) protein (242aa)
flagellar motor protein MotB n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037FE7F1
Putative two-component system sensor kinase/response regulator
Uncharacterized protein {ECO:0000313|EMBL:AGK78594.1}; TaxID=1303692 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
SCNpilot_bf_inoc_scaffold_1285_curated_4
Rhodococcus pyridinivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2504..3691)
DNA (1188bp) protein (396aa)
UPI0003D6B4B3 related cluster n=1 Tax=unknown RepID=UPI0003D6B4B3
TetR family transcriptional regulator {ECO:0000313|EMBL:AHD21491.1}; TaxID=1435356 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus pyridinivorans SB3094.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_1285_curated_5
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3728..4477)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002FC5CB6
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:KJE21726.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
enoyl-CoA hydratase
SCNpilot_bf_inoc_scaffold_1285_curated_6
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4683..5333
DNA (651bp) protein (217aa)
GntR family transcriptional regulator n=1 Tax=Streptomyces rapamycinicus RepID=UPI00038309F2
GntR family transcriptional regulator {ECO:0000313|EMBL:AGP56457.1}; TaxID=1343740 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
GntR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1285_curated_7
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5315..6910)
DNA (1596bp) protein (532aa)
Malate synthase {ECO:0000256|RuleBase:RU000555}; EC=2.3.3.9 {ECO:0000256|RuleBase:RU000555};; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
malate synthase (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9] rbh
Malate synthase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RW9_SYMTH
SCNpilot_bf_inoc_scaffold_1285_curated_8
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(6927..8192)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PNV9_MEIRD
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
hypothetical protein; K11473 glycolate oxidase iron-sulfur subunit
SCNpilot_bf_inoc_scaffold_1285_curated_9
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(8189..9349)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI00036CB0B5
Strain A contig00036, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ54574.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
FAD linked oxidase domain-containing protein; K11472 glycolate oxidase FAD binding subunit
SCNpilot_bf_inoc_scaffold_1285_curated_10
Thermus aquaticus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(9346..10773)
DNA (1428bp) protein (476aa)
FAD linked oxidase domain protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A6Q4_THEAQ
FAD linked oxidase domain protein {ECO:0000313|EMBL:EED10943.1}; TaxID=498848 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus aquaticus Y51MC23.;"
FAD/FMN-dependent dehydrogenase
SCNpilot_bf_inoc_scaffold_1285_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10810..11508
DNA (699bp) protein (233aa)
2-oxopent-4-enoate hydratase n=1 Tax=Bacillus sp. 1NLA3E RepID=H1HZU7_9BACI id=1245740 bin=RBG9 species=Bacillus sp. 1NLA3E genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG9 organism_group=Chloroflexi
2-keto-4-pentenoate hydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_bf_inoc_scaffold_1285_curated_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11521..13347)
DNA (1827bp) protein (609aa)
PEP-utilizing protein mobile subunit n=1 Tax=Comamonas testosteroni RepID=UPI0002E0C613
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU47108.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_1285_curated_13
unknown

Not on your lists

comp(13348..13557)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1285_curated_14
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14079..15482
DNA (1404bp) protein (468aa)
putative ammonium transporter n=1 Tax=Acetobacter aceti RepID=UPI0002260427
Ammonium transporter {ECO:0000313|EMBL:GAN58438.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
ammonium transporter
SCNpilot_bf_inoc_scaffold_1285_curated_15
Rhodococcus sp. PY11, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16145..16891)
DNA (747bp) protein (249aa)
Maleate isomerase {ECO:0000256|HAMAP-Rule:MF_00943}; EC=5.2.1.1 {ECO:0000256|HAMAP-Rule:MF_00943};; Maleate cis-trans isomerase {ECO:0000256|HAMAP-Rule:MF_00943}; TaxID=551544 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. PY11.;"
Asp/Glu/hydantoin racemase; K01799 maleate isomerase [EC:5.2.1.1]
Maleate isomerase n=1 Tax=Rhodococcus sp. PY11 RepID=B5MAB5_9NOCA
SCNpilot_bf_inoc_scaffold_1285_curated_16
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16888..17541)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EE1489
carbon monoxide dehydrogenase subunit G
Carbon monoxide dehydrogenase subunit G family protein {ECO:0000313|EMBL:ELQ90499.1}; TaxID=1214915 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis MKD8.;"
SCNpilot_bf_inoc_scaffold_1285_curated_17
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17531..19918)
DNA (2388bp) protein (796aa)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:ELQ90494.1}; EC=1.17.1.4 {ECO:0000313|EMBL:ELQ90494.1};; TaxID=1214915 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis MKD8.;"
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8FGM2_MYCSM
xanthine dehydrogenase, molybdenum binding subunit apoprotein
SCNpilot_bf_inoc_scaffold_1285_curated_18
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19915..20391)
DNA (477bp) protein (159aa)
Carbon monoxide dehydrogenase small chain CoxS {ECO:0000313|EMBL:ELQ90495.1}; EC=1.2.99.2 {ECO:0000313|EMBL:ELQ90495.1};; TaxID=1214915 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis MKD8.;"
oxidoreductase, 2Fe-2S subunit; carbon monoxide dehydrogenase, small subunit CoxS (EC:1.2.99.2); K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Carbon monoxide dehydrogenase small chain CoxS n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8FGH0_MYCSM
SCNpilot_bf_inoc_scaffold_1285_curated_19
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20384..21253)
DNA (870bp) protein (290aa)
Carbon-monoxide dehydrogenase middle subunit {ECO:0000313|EMBL:ELQ90500.1}; EC=1.2.99.2 {ECO:0000313|EMBL:ELQ90500.1};; TaxID=1214915 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis MKD8.;"
Carbon-monoxide dehydrogenase middle subunit n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8FGH3_MYCSM
carbon monoxide dehydrogenase medium subunit
SCNpilot_bf_inoc_scaffold_1285_curated_20
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21250..22332)
DNA (1083bp) protein (361aa)
Pyruvate phosphate dikinase, PEP/pyruvate-binding protein n=1 Tax=Comamonas testosteroni S44 RepID=D8D7T9_COMTE
Pyruvate phosphate dikinase, PEP/pyruvate-binding protein {ECO:0000313|EMBL:EFI60979.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
pyruvate phosphate dikinase
SCNpilot_bf_inoc_scaffold_1285_curated_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22325..23383)
DNA (1059bp) protein (353aa)
leucyl aminopeptidase n=1 Tax=Nocardiopsis xinjiangensis RepID=UPI000344C80E
Uncharacterized protein {ECO:0000313|EMBL:EUB99888.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1285_curated_22
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23398..24258)
DNA (861bp) protein (287aa)
alpha/beta hydrolase; K15357 N-formylmaleamate deformylase [EC:3.5.1.106]
Alpha/beta hydrolase fold containing protein n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NUE5_STRVO
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:AEM84323.1}; TaxID=653045 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
SCNpilot_bf_inoc_scaffold_1285_curated_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24251..25258)
DNA (1008bp) protein (336aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQU5_9GAMM
SCNpilot_bf_inoc_scaffold_1285_curated_24
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25255..25932)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Streptomyces albulus CCRC 11814 RepID=S9Z402_STRA9
N-carbamoylsarcosine amidase {ECO:0000313|EMBL:AIA01974.1}; TaxID=68570 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus.;"
isochorismatase hydrolase
SCNpilot_bf_inoc_scaffold_1285_curated_25
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

26036..26746
DNA (711bp) protein (237aa)
Transcriptional regulator, GntR family n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G6Z3_CHLAD
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACL25952.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
SCNpilot_bf_inoc_scaffold_1285_curated_26
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

26743..27543
DNA (801bp) protein (267aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter related protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F019_CONWI
ABC transporter related protein {ECO:0000313|EMBL:ADB49995.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1285_curated_27
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

27540..28649
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2L9_CONWI
hypothetical protein; K07402 xanthine dehydrogenase accessory factor
Uncharacterized protein {ECO:0000313|EMBL:ADB52285.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1285_curated_28
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28662..29207)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1I884_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EOD68756.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
MobA-like protein
SCNpilot_bf_inoc_scaffold_1285_curated_29
unknown

Not on your lists

comp(29219..30181)
DNA (963bp) protein (321aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1285_curated_30
unknown

Not on your lists

comp(31016..31276)
DNA (261bp) protein (87aa)

This feature has no annotations

Displaying items 1-30 of 43 in total

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