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SCNpilot_bf_inoc_scaffold_260_curated

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_260_curated_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..76
DNA (75bp) protein (25aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
coproporphyrinogen III oxidase (EC:1.3.3.3)
coproporphyrinogen III oxidase n=1 Tax=Dyella ginsengisoli RepID=UPI000366E9A7
SCNpilot_bf_inoc_scaffold_260_curated_2
unknown

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comp(92..1012)
DNA (921bp) protein (307aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_260_curated_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1115..2311
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000303BBD3
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:AHX15101.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
3-oxoacyl-(acyl-carrier-protein) synthase
SCNpilot_bf_inoc_scaffold_260_curated_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2308..3108
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B3331
Uncharacterized protein {ECO:0000313|EMBL:KGI76726.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
beta-ketoacyl synthase family protein
SCNpilot_bf_inoc_scaffold_260_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3105..3944
DNA (840bp) protein (280aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFP8_9GAMM
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL98289.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyl transferase
SCNpilot_bf_inoc_scaffold_260_curated_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3949..5547
DNA (1599bp) protein (533aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347F411
Fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein {ECO:0000313|EMBL:EIL88020.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
halogenase
SCNpilot_bf_inoc_scaffold_260_curated_7
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5568..6512)
DNA (945bp) protein (315aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas RepID=M5CR14_STEMA
Peptidoglycan-binding protein {ECO:0000313|EMBL:KGM56408.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_260_curated_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6754..7485)
DNA (732bp) protein (244aa)
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2M5_9GAMM
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:GAN45055.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_bf_inoc_scaffold_260_curated_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7498..7932)
DNA (435bp) protein (145aa)
Putative 3-hydroxylacyl-(Acyl carrier protein) dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFP6_9GAMM
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:GAN45054.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative 3-hydroxylacyl-(acyl carrier protein) dehydratase
SCNpilot_bf_inoc_scaffold_260_curated_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7978..10392)
DNA (2415bp) protein (805aa)
Putative exporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WMW3_9GAMM
Xanthomonadin exporter protein {ECO:0000313|EMBL:KGI76730.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative exporter
SCNpilot_bf_inoc_scaffold_260_curated_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10389..11030)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMW4_9GAMM
Fatty acyl CoA synthetase {ECO:0000313|EMBL:AHX15107.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_260_curated_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11020..11979)
DNA (960bp) protein (320aa)
Acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMW5_9GAMM
Acyltransferase {ECO:0000313|EMBL:AHX15108.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
putative acyltransferase
SCNpilot_bf_inoc_scaffold_260_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11976..12272)
DNA (297bp) protein (99aa)
(3R)-hydroxymyristoyl-ACP dehydratase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLD5_9GAMM
3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase
3-hydroxymyristoyl/3-hydroxydecanoyl-(Acyl carrier protein) dehydratase {ECO:0000313|EMBL:AGG90826.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_260_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12269..12994)
DNA (726bp) protein (242aa)
Ketosynthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFP1_9GAMM
Ketosynthase {ECO:0000313|EMBL:EIL98282.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
xanthomonadin biosynthesis membrane protein
SCNpilot_bf_inoc_scaffold_260_curated_15
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13080..14402
DNA (1323bp) protein (441aa)
Hydroxylase {ECO:0000313|EMBL:CCP39866.1}; EC=1.14.13.- {ECO:0000313|EMBL:CCP39866.1};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
oxidoreductase (EC:1.-.-.-)
Hydroxylase n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SYH7_XANCT
SCNpilot_bf_inoc_scaffold_260_curated_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14410..15264
DNA (855bp) protein (285aa)
Alpha/beta hydrolase fold domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX66_9GAMM
Hydrolase of the alpha-beta fold superfamily protein {ECO:0000313|EMBL:EIL87902.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
SCNpilot_bf_inoc_scaffold_260_curated_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15360..16115
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMI2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45712.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_260_curated_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16251..17249)
DNA (999bp) protein (333aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Delta-aminolevulinic acid dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=M4NLR7_9GAMM
delta-aminolevulinic acid dehydratase
SCNpilot_bf_inoc_scaffold_260_curated_19
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17507..17986
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNC5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45554.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
membrane protease subunit, stomatin/prohibitin
SCNpilot_bf_inoc_scaffold_260_curated_20
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18264..18863
DNA (600bp) protein (200aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-)
16S rRNA methyltransferase n=1 Tax=Dyella japonica RepID=UPI0002EC63D1
SCNpilot_bf_inoc_scaffold_260_curated_21
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18937..19773
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003790276
Chromosome partitioning protein {ECO:0000313|EMBL:KGI76699.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
chromosome partitioning ATPase; K03496 chromosome partitioning protein
SCNpilot_bf_inoc_scaffold_260_curated_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19770..20636
DNA (867bp) protein (289aa)
ParB-like partition protein n=2 Tax=mine drainage metagenome RepID=T1C1C4_9ZZZZ
Chromosome partitioning protein ParB {ECO:0000313|EMBL:GAN45557.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ParB-like partition protein
SCNpilot_bf_inoc_scaffold_260_curated_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20797..21513
DNA (717bp) protein (239aa)
dolichol-phosphate mannosyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034AA288
Dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:GAN45559.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycosyl transferase
SCNpilot_bf_inoc_scaffold_260_curated_24
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

21710..22612
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XEV5_DELAC
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SCNpilot_bf_inoc_scaffold_260_curated_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22733..23089
DNA (357bp) protein (119aa)
YCII-related protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KNM2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAN45449.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
YCII-related protein
SCNpilot_bf_inoc_scaffold_260_curated_26
unknown

Not on your lists

23160..23504
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002D42B62
SCNpilot_bf_inoc_scaffold_260_curated_27
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23501..23863
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00037B2937
YCII-related protein {ECO:0000313|EMBL:EGI78588.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_260_curated_28
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23860..25083
DNA (1224bp) protein (408aa)
RNA polymerase sigma70 factor {ECO:0000313|EMBL:GAN45450.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Putative RNA polymerase, sigma-24 subunit, ECF subfamily id=4216382 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative RNA polymerase sigma factor containing a TPR repeat domain
SCNpilot_bf_inoc_scaffold_260_curated_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25227..25670)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000377DE5B
Membrane protein {ECO:0000313|EMBL:GAN45560.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Rhodanese-related sulfurtransferase
SCNpilot_bf_inoc_scaffold_260_curated_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25729..26139)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIY0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87171.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
Displaying items 1-30 of 73 in total

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