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SCNpilot_bf_inoc_scaffold_193_curated

Search features with annotation key words

Displaying items 1-30 of 290 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_193_curated_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1097..1672
DNA (576bp) protein (192aa)
P pilus assembly protein, pilin FimA n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L5I1_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:KGI78996.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
P pilus assembly protein, pilin FimA
SCNpilot_bf_inoc_scaffold_193_curated_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1759..2505
DNA (747bp) protein (249aa)
P pilus assembly protein, chaperone PapD n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL01_9GAMM
Molecular chaperone EcpD {ECO:0000313|EMBL:AHX15581.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
P pilus assembly protein, chaperone PapD; K15540 chaperone protein EcpD
SCNpilot_bf_inoc_scaffold_193_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2502..5255
DNA (2754bp) protein (918aa)
P pilus assembly protein, porin PapC (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK97_9GAMM
P pilus assembly protein, porin PapC {ECO:0000313|EMBL:EIL87638.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
P pilus assembly protein, porin PapC
SCNpilot_bf_inoc_scaffold_193_curated_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5381..6298
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B8F4A
Uncharacterized protein {ECO:0000313|EMBL:AHX16468.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
fimbrial protein
SCNpilot_bf_inoc_scaffold_193_curated_5
unknown

Not on your lists

comp(6302..6766)
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_193_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6868..7995)
DNA (1128bp) protein (376aa)
Peptidase t2 asparaginase 2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2R9_9GAMM
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:EIL93760.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidase S51 dipeptidase E
SCNpilot_bf_inoc_scaffold_193_curated_7
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8122..8694
DNA (573bp) protein (191aa)
transcriptional regulator n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00036150AF
Transcriptional regulator {ECO:0000313|EMBL:AJC46670.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
two-component system regulatory protein
SCNpilot_bf_inoc_scaffold_193_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8691..9773
DNA (1083bp) protein (361aa)
Two-component system sensor protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S1_9GAMM
Two-component system sensor protein {ECO:0000313|EMBL:EIL93762.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
two-component system sensor protein
SCNpilot_bf_inoc_scaffold_193_curated_9
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9856..12909
DNA (3054bp) protein (1018aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D6735
TonB-dependent receptor
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_bf_inoc_scaffold_193_curated_10
unknown

Not on your lists

comp(12825..13025)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_193_curated_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13058..14149)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF n=1 Tax=Dyella japonica RepID=UPI0002F60E30
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
GTP-binding protein YchF
SCNpilot_bf_inoc_scaffold_193_curated_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14259..14858)
DNA (600bp) protein (200aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S4_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_193_curated_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15053..15775)
DNA (723bp) protein (241aa)
50S ribosomal protein L25 n=1 Tax=Dyella ginsengisoli RepID=UPI000345573A
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ribosomal protein L25, Ctc-form
SCNpilot_bf_inoc_scaffold_193_curated_14
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15916..16875)
DNA (960bp) protein (320aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xan
prs; ribose-phosphate diphosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
ribose-phosphate pyrophosphokinase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00036131C0
SCNpilot_bf_inoc_scaffold_193_curated_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17598..18218)
DNA (621bp) protein (207aa)
Outer-membrane lipoprotein LolB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ25_9GAMM
Outer-membrane lipoprotein LolB {ECO:0000256|HAMAP-Rule:MF_00233, ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
outer membrane lipoprotein LolB
SCNpilot_bf_inoc_scaffold_193_curated_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18215..20083)
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W541_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94582.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Flp pilus assembly protein TadD
SCNpilot_bf_inoc_scaffold_193_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20158..21420
DNA (1263bp) protein (421aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glutamyl-tRNA reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKN5_9GAMM
SCNpilot_bf_inoc_scaffold_193_curated_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21417..22499
DNA (1083bp) protein (361aa)
peptide chain release factor 1 n=1 Tax=Dyella japonica RepID=UPI000308AFB2
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
bacterial peptide chain release factor 1 (bRF-1)
SCNpilot_bf_inoc_scaffold_193_curated_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22496..24757
DNA (2262bp) protein (754aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030BDFB9
Uncharacterized protein {ECO:0000313|EMBL:AHX14300.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_193_curated_20
unknown

Not on your lists

25161..25550
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_193_curated_21
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25644..26165
DNA (522bp) protein (174aa)
Molybdenum cofactor biosynthesis protein B n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVJ4_PSEUU
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B
SCNpilot_bf_inoc_scaffold_193_curated_22
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26379..26645)
DNA (267bp) protein (89aa)
Acylphosphatase {ECO:0000256|RuleBase:RU000553, ECO:0000256|SAAS:SAAS00255930}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G2D0_XANCT
SCNpilot_bf_inoc_scaffold_193_curated_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26648..27154)
DNA (507bp) protein (169aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T4_9GAMM
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:EIL93775.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiol-disulfide isomerase-like thioredoxin
SCNpilot_bf_inoc_scaffold_193_curated_24
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27151..28416)
DNA (1266bp) protein (422aa)
hypothetical protein (EC:3.1.-.-)
UPF0761 membrane protein rbn n=1 Tax=Rhodanobacter denitrificans RepID=I4WG37_9GAMM
UPF0761 membrane protein LF63_0111300 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_bf_inoc_scaffold_193_curated_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28602..29198
DNA (597bp) protein (199aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T6_9GAMM
NAD(P)H:quinone oxidoreductase, type IV
SCNpilot_bf_inoc_scaffold_193_curated_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29195..29542
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT93_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02685.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_193_curated_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29539..31320
DNA (1782bp) protein (594aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ14_9GAMM
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AHX14310.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
acyl-CoA dehydrogenase
SCNpilot_bf_inoc_scaffold_193_curated_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31275..32405)
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGA7_9GAMM
SCNpilot_bf_inoc_scaffold_193_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32468..32872)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C6EF8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89832.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_193_curated_30
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32916..33992)
DNA (1077bp) protein (359aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035EEB5E
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Displaying items 1-30 of 290 in total

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