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SCNpilot_bf_inoc_scaffold_38_curated

Search features with annotation key words

Displaying items 121-150 of 634 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_38_curated_121
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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132098..136063
DNA (3966bp) protein (1322aa)
TIGR02099 family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NC28_9GAMM
TIGR02099 family protein
TIGR02099 family protein {ECO:0000313|EMBL:AGG88169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_38_curated_122
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

136100..136405
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7A0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDY17751.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_bf_inoc_scaffold_38_curated_123
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136488..137927
DNA (1440bp) protein (480aa)
protease TldD n=1 Tax=Dyella japonica RepID=UPI000306B9F2
Protease TldD {ECO:0000313|EMBL:KJV30864.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
microcin-processing peptidase 2
SCNpilot_bf_inoc_scaffold_38_curated_124
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137928..138461)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL28_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00170.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein; K09889 ribosome-associated protein
SCNpilot_bf_inoc_scaffold_38_curated_125
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138485..139855
DNA (1371bp) protein (457aa)
Putative Zn-dependent protease-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL26_9GAMM
Putative Zn-dependent protease-like protein {ECO:0000313|EMBL:EIM00168.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
microcin-processing peptidase 1
SCNpilot_bf_inoc_scaffold_38_curated_126
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139817..140908)
DNA (1092bp) protein (364aa)
Peptidase, M48 family n=2 Tax=Geobacter metallireducens RepID=Q39ZH9_GEOMG
Uncharacterized protein {ECO:0000313|EMBL:AHX16368.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
peptidase M48, Ste24p
SCNpilot_bf_inoc_scaffold_38_curated_127
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140905..142068)
DNA (1164bp) protein (388aa)
Uncharacterized protein {ECO:0000313|EMBL:AHX16367.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Putative uncharacterized protein id=2794545 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_128
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142161..143651
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI0002630274
Uncharacterized protein {ECO:0000313|EMBL:AJC45375.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_129
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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143654..144868
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI0002630273
Uncharacterized protein {ECO:0000313|EMBL:AJC45374.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_130
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144968..145405
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037EFA0C
Orotate phosphoribosyltransferase {ECO:0000313|EMBL:AHX14234.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_131
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145501..145779)
DNA (279bp) protein (93aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
exodeoxyribonuclease VII small subunit n=1 Tax=Xanthomonas RepID=UPI00035E0683
SCNpilot_bf_inoc_scaffold_38_curated_132
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146541..147848
DNA (1308bp) protein (436aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Trigger factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6M7_9GAMM
trigger factor
SCNpilot_bf_inoc_scaffold_38_curated_133
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147888..148526
DNA (639bp) protein (213aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4VN72_9GAMM
SCNpilot_bf_inoc_scaffold_38_curated_134
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148679..149971
DNA (1293bp) protein (431aa)
endopeptidase Clp ATP-binding regulatory subunit ClpX (EC:3.4.21.92)
ATP-dependent protease n=1 Tax=Dyella japonica RepID=UPI0002F7D4E8
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_bf_inoc_scaffold_38_curated_135
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

150288..152801
DNA (2514bp) protein (838aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
peptidase n=1 Tax=Dyella japonica RepID=UPI00036C13F5
ATP-dependent proteinase
SCNpilot_bf_inoc_scaffold_38_curated_136
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153112..153384
DNA (273bp) protein (91aa)
transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI000349F8D6
DNA-binding protein {ECO:0000313|EMBL:AHX13651.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta
SCNpilot_bf_inoc_scaffold_38_curated_137
unknown

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154394..154726
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_138
unknown

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154723..155205
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_139
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155202..156086
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K8U9_CUPNH
h16_A2484; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ93572.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
SCNpilot_bf_inoc_scaffold_38_curated_140
Eimeria mitis, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

Not on your lists

156140..157087
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Eimeria mitis RepID=U6KF78_9EIME
Uncharacterized protein {ECO:0000313|EMBL:CDJ35431.1}; TaxID=44415 species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria mitis.;"
SCNpilot_bf_inoc_scaffold_38_curated_141

Not on your lists

157089..158570
DNA (1482bp) protein (494aa)
ATP-dependent chaperone protein ClpB n=1 Tax=mine drainage metagenome RepID=T1BMF8_9ZZZZ
ATP-dependent chaperone protein ClpB {ECO:0000313|EMBL:EQD69703.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
clpA; Clp protease ATP-binding subunit ClpA
SCNpilot_bf_inoc_scaffold_38_curated_142
unknown

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158567..158851
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_143
unknown

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158922..159146
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_144

Not on your lists

159143..159436
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM05264.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_bf_inoc_scaffold_38_curated_145
unknown

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159558..160508
DNA (951bp) protein (317aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_146
unknown

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161554..162231
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_147
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162228..163952
DNA (1725bp) protein (575aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALMg11 RepID=UPI00036E9BF6
Uncharacterized protein {ECO:0000313|EMBL:AJW47710.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
traG; sex pilus assembly and mating pair formation
SCNpilot_bf_inoc_scaffold_38_curated_148
unknown

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comp(163949..164134)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_149
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

164260..165828
DNA (1569bp) protein (523aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003821EA1
YadA domain protein {ECO:0000313|EMBL:ACA93376.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
YadA domain-containing protein
SCNpilot_bf_inoc_scaffold_38_curated_150
unknown

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165913..166593
DNA (681bp) protein (227aa)

This feature has no annotations

Displaying items 121-150 of 634 in total

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