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SCNpilot_bf_inoc_scaffold_38_curated

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Displaying items 1-30 of 634 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_38_curated_1
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2..1858
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00036A99B9
Cell surface protein {ECO:0000313|EMBL:AKB80284.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
carbohydrate binding family 6
SCNpilot_bf_inoc_scaffold_38_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2183..3949
DNA (1767bp) protein (589aa)
Sodium/hydrogen exchanger n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK5_9GAMM
Sodium/hydrogen exchanger {ECO:0000313|EMBL:EIM01397.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Kef-type K+ transport system, predicted NAD-binding component
SCNpilot_bf_inoc_scaffold_38_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3963..4760)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVP7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91288.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_bf_inoc_scaffold_38_curated_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4869..6701)
DNA (1833bp) protein (611aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3Q2_NITHN
Uncharacterized protein {ECO:0000313|EMBL:AKC87885.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_5
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6785..7522)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000378A49B
Uncharacterized protein {ECO:0000313|EMBL:KGI78716.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
surfeit locus 1 family protein (Surf1-like)
SCNpilot_bf_inoc_scaffold_38_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7545..7946)
DNA (402bp) protein (134aa)
Cytochrome O ubiquinol oxidase subunit IV (EC:1.10.3.-)
Cytochrome o ubiquinol oxidase subunit IV n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK0_9GAMM
Cytochrome o ubiquinol oxidase subunit IV {ECO:0000313|EMBL:EIL87391.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_38_curated_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7943..8569)
DNA (627bp) protein (209aa)
cyoC; cytochrome O ubiquinol oxidase subunit III (EC:1.10.3.-); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
Cytochrome ubiquinol oxidase subunit III n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK1_9GAMM
Cytochrome ubiquinol oxidase subunit III {ECO:0000313|EMBL:EIL87392.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_38_curated_8
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8566..10596)
DNA (2031bp) protein (677aa)
cyoB; cytochrome O ubiquinol oxidase, subunit I (EC:1.10.3.-); K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
cytochrome O ubiquinol oxidase n=1 Tax=Arhodomonas aquaeolei RepID=UPI000367272F
Cytochrome o ubiquinol oxidase subunit I 2 {ECO:0000313|EMBL:EIT67974.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
SCNpilot_bf_inoc_scaffold_38_curated_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10620..11615)
DNA (996bp) protein (332aa)
Cytochrome o ubiquinol oxidase subunit II n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK4_9GAMM
Cytochrome o ubiquinol oxidase subunit II {ECO:0000313|EMBL:EIL87395.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cyoA; ubiquinol oxidase subunit II
SCNpilot_bf_inoc_scaffold_38_curated_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11835..13166
DNA (1332bp) protein (444aa)
General substrate transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK5_9GAMM
Arabinose ABC transporter permease {ECO:0000313|EMBL:KGI78499.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transporter protein
SCNpilot_bf_inoc_scaffold_38_curated_11

Not on your lists

13949..14794
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346CE8F
Sulfotransferase {ECO:0000313|EMBL:EQD26513.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sulfotransferase
SCNpilot_bf_inoc_scaffold_38_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14986..15477)
DNA (492bp) protein (164aa)
SsrA-binding protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH2_9GAMM
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_38_curated_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15667..16179
DNA (513bp) protein (171aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T9_9GAMM
Oligoketide cyclase {ECO:0000313|EMBL:KGI78196.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
oligoketide cyclase/lipid transport protein
SCNpilot_bf_inoc_scaffold_38_curated_14
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16196..16459
DNA (264bp) protein (88aa)
UPF0125 protein ROD_25671 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TUP1_CITRI
hypothetical protein; K09801 hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_bf_inoc_scaffold_38_curated_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16680..17138)
DNA (459bp) protein (153aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN8_9GAMM
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
small protein A (tmRNA-binding)
SCNpilot_bf_inoc_scaffold_38_curated_16
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17218..17622
DNA (405bp) protein (135aa)
Fur family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5F294
Fur family transcriptional regulator {ECO:0000313|EMBL:KFN49985.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Fe2+/Zn2+ uptake regulation protein
SCNpilot_bf_inoc_scaffold_38_curated_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17683..19488
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003636E9C
Uncharacterized protein {ECO:0000313|EMBL:EIL92446.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19654..21330)
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_38_curated_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21502..22545
DNA (1044bp) protein (348aa)
HrcA family transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI00031B8E66
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
heat-inducible transcription repressor HrcA
SCNpilot_bf_inoc_scaffold_38_curated_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22754..23299
DNA (546bp) protein (182aa)
Protein GrpE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI84_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
molecular chaperone GrpE (heat shock protein)
SCNpilot_bf_inoc_scaffold_38_curated_21
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23391..25328
DNA (1938bp) protein (646aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ8_9GAMM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
chaperone protein DnaK; K04043 molecular chaperone DnaK
SCNpilot_bf_inoc_scaffold_38_curated_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25487..26107
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E7DEC
Uncharacterized protein {ECO:0000313|EMBL:AHX13390.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26104..27219
DNA (1116bp) protein (372aa)
molecular chaperone DnaJ n=1 Tax=Dyella ginsengisoli RepID=UPI00034C5615
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
chaperone protein DnaJ
SCNpilot_bf_inoc_scaffold_38_curated_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27426..28160
DNA (735bp) protein (245aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTX6_9GAMM
SCNpilot_bf_inoc_scaffold_38_curated_25
unknown

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comp(28215..28694)
DNA (480bp) protein (160aa)
seg id=721304 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
SCNpilot_bf_inoc_scaffold_38_curated_26
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28712..29941)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003745C86
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_bf_inoc_scaffold_38_curated_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30118..31167)
DNA (1050bp) protein (350aa)
Alpha/beta hydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNR1_9GAMM
Alpha/beta hydrolase {ECO:0000313|EMBL:EIL88852.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31422..32435)
DNA (1014bp) protein (338aa)
Cytochrome C binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWF5_9GAMM
Cytochrome C binding protein {ECO:0000313|EMBL:EIL91546.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cyc4; hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_29
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32519..33298)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348D2F2
Uncharacterized protein {ECO:0000313|EMBL:AHX14744.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_38_curated_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33559..34254)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034AAA6B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88947.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 634 in total

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