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SCNpilot_bf_inoc_scaffold_38_curated

Search features with annotation key words

Displaying items 31-60 of 634 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_38_curated_31
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34433..35584
DNA (1152bp) protein (384aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
carbamoyl phosphate synthase small subunit n=1 Tax=Dyella japonica RepID=UPI0002F90B3D
carbamoyl-phosphate synthase small subunit
SCNpilot_bf_inoc_scaffold_38_curated_32
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35587..35970
DNA (384bp) protein (128aa)
Uncharacterized protein (Fragment) n=3 Tax=mine drainage metagenome RepID=T0ZKN3_9ZZZZ
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_38_curated_33
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36033..39296
DNA (3264bp) protein (1088aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTY0_9GAMM
carbamoyl-phosphate synthase, large subunit
SCNpilot_bf_inoc_scaffold_38_curated_34
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39376..39852
DNA (477bp) protein (159aa)
transcription elongation factor GreA n=1 Tax=Dyella ginsengisoli RepID=UPI000346892C
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcription elongation factor GreA
SCNpilot_bf_inoc_scaffold_38_curated_35
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39849..41741
DNA (1893bp) protein (631aa)
glutathione ABC transporter ATP-binding protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003689068
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGI78306.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3
SCNpilot_bf_inoc_scaffold_38_curated_36
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41738..42652
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGI78305.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
regulatory protein
SCNpilot_bf_inoc_scaffold_38_curated_37
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42738..44495
DNA (1758bp) protein (586aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL4_9GAMM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIL99305.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_bf_inoc_scaffold_38_curated_38
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44511..45170)
DNA (660bp) protein (220aa)
O-methyltransferase (EC:2.1.1.-)
O-methyltransferase {ECO:0000313|EMBL:AEK62040.1}; EC=2.1.1.- {ECO:0000313|EMBL:AEK62040.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
O-methyltransferase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AKB3_COLFT
SCNpilot_bf_inoc_scaffold_38_curated_39
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45523..47205
DNA (1683bp) protein (561aa)
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8X8_9GAMM
Asparagine synthetase B {ECO:0000313|EMBL:EIL95919.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_38_curated_40
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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47308..48147
DNA (840bp) protein (280aa)
Putative methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NA25_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG87230.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_38_curated_41
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48202..48762
DNA (561bp) protein (187aa)
NADPH-dependent FMN reductase n=1 Tax=Xanthomonas RepID=UPI0003616A63
NADPH-dependent FMN reductase {ECO:0000313|EMBL:AHX12685.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Putative oxidoreductase
SCNpilot_bf_inoc_scaffold_38_curated_42
unknown

Not on your lists

comp(48787..48981)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_43
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49014..49436)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRH9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89820.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_44
unknown

Not on your lists

49524..49658
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_38_curated_45

Not on your lists

49747..50712
DNA (966bp) protein (322aa)
Peptide chain release factor 2 n=2 Tax=mine drainage metagenome RepID=T0Y351_9ZZZZ
Peptide chain release factor 2 {ECO:0000313|EMBL:EQD27453.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptide chain release factor 2; K02836 peptide chain release factor 2
SCNpilot_bf_inoc_scaffold_38_curated_46
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50699..52237
DNA (1539bp) protein (513aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
lysyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034B721E
lysyl-tRNA synthetase (class II)
SCNpilot_bf_inoc_scaffold_38_curated_47
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(52244..52891)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003493593
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC
Tax=RBG_16_Gemmatimonadetes_66_8_curated
SCNpilot_bf_inoc_scaffold_38_curated_48
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53019..53318
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000381E331
Uncharacterized protein {ECO:0000313|EMBL:KJV37121.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_49
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53328..53723
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NUB9_CHRVO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AAQ60449.1}; TaxID=243365 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /; NBRC 12614 / NCIMB 9131 / NCTC 9757).;"
SCNpilot_bf_inoc_scaffold_38_curated_50
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53704..54036
DNA (333bp) protein (111aa)
Stress-induced morphogen n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIK7_9GAMM
Cell division protein BolA {ECO:0000313|EMBL:KGI78206.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
stress-induced morphogen; K05527 BolA protein
SCNpilot_bf_inoc_scaffold_38_curated_51
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54184..57690
DNA (3507bp) protein (1169aa)
Chromosome partition protein Smc n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIK6_9GAMM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chromosome segregation protein SMC
SCNpilot_bf_inoc_scaffold_38_curated_52
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57741..58529
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E3DE1
Cell division protein ZipA {ECO:0000256|RuleBase:RU003612}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
zipA; cell division protein ZipA; K03528 cell division protein ZipA
SCNpilot_bf_inoc_scaffold_38_curated_53
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58565..59218
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HYA3_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EQM81395.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
FMN-binding negative transcriptional regulator
SCNpilot_bf_inoc_scaffold_38_curated_54
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(59339..60241)
DNA (903bp) protein (301aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WBF7_DESOD
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:AIF52808.1}; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
phenazine biosynthesis protein PhzF family; K06998
SCNpilot_bf_inoc_scaffold_38_curated_55
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(60286..61086)
DNA (801bp) protein (267aa)
methyltransferase n=1 Tax=Streptomyces sp. TOR3209 RepID=UPI0002F61605
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK30884.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
SCNpilot_bf_inoc_scaffold_38_curated_56
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61183..62049)
DNA (867bp) protein (289aa)
Trans-2,3-dihydro-3-hydroxyanthranilate isomerase {ECO:0000313|EMBL:KFB70018.1}; EC=5.3.3.17 {ECO:0000313|EMBL:KFB70018.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
Phenazine biosynthesis protein PhzF like protein n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MD18_PSEPS
isomerase yddE
SCNpilot_bf_inoc_scaffold_38_curated_57
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(62162..62629)
DNA (468bp) protein (156aa)
SnoaL-like domain {ECO:0000313|EMBL:CDM65864.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative uncharacterized protein id=4341289 bin=GWF2_Methylomirabilis_70_14 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
SCNpilot_bf_inoc_scaffold_38_curated_58
Serratia plymuthica, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62749..63141)
DNA (393bp) protein (131aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Carboxymuconolactone decarboxylase n=4 Tax=Serratia RepID=G0B8I4_SERSA
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:AGO56074.1}; TaxID=682634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia plymuthica 4Rx13.;"
SCNpilot_bf_inoc_scaffold_38_curated_59
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63287..64159
DNA (873bp) protein (291aa)
Transcriptional regulator, LysR family n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AC37_COLFT
LysR family transcriptional regulator {ECO:0000313|EMBL:KGM35195.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
LysR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_38_curated_60
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64309..64569)
DNA (261bp) protein (87aa)
acyl-CoA-binding protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036EED3F
Acyl-CoA-binding protein {ECO:0000313|EMBL:EYR67434.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
acyl-CoA-binding protein
Displaying items 31-60 of 634 in total

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