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SCNpilot_bf_inoc_scaffold_16_curated

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Displaying items 151-180 of 540 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_16_curated_151
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(200437..200940)
DNA (504bp) protein (168aa)
FixH family protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) PF4_PSEUU">RepID=E6WPF4_PSEUU
FixH family protein; K09926 hypothetical protein
FixH family protein {ECO:0000313|EMBL:ADV26198.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_bf_inoc_scaffold_16_curated_152
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(200937..202484)
DNA (1548bp) protein (516aa)
cytochrome C oxidase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002D5A5B7
(Fe-S)-binding protein {ECO:0000313|EMBL:AKC86395.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
cytochrome c oxidase accessory protein CcoG
SCNpilot_bf_inoc_scaffold_16_curated_153
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(202481..202774)
DNA (294bp) protein (98aa)
membrane protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003623402
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_bf_inoc_scaffold_16_curated_154
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(202771..203688)
DNA (918bp) protein (306aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) PF7_PSEUU">RepID=E6WPF7_PSEUU
cytochrome c oxidase cbb3-type subunit III; K00406 cytochrome c oxidase cbb3-type subunit III
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_16_curated_155
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(203685..203840)
DNA (156bp) protein (52aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) PF8_PSEUU">RepID=E6WPF8_PSEUU
Uncharacterized protein {ECO:0000313|EMBL:KGQ20038.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein; K00407 cytochrome c oxidase cbb3-type subunit IV
SCNpilot_bf_inoc_scaffold_16_curated_156
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(203837..204490)
DNA (654bp) protein (218aa)
peptidase S41 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5324E
Peptidase S41 {ECO:0000313|EMBL:KFN45008.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
cbb3-type cytochrome c oxidase subunit II; K00405 cytochrome c oxidase cbb3-type subunit II
SCNpilot_bf_inoc_scaffold_16_curated_157
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(204501..205940)
DNA (1440bp) protein (480aa)
cbb3-type cytochrome c oxidase subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
cytochrome oxidase subunit I n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B60BAD
Cbb3-type cytochrome c oxidase subunit I {ECO:0000313|EMBL:KGM53549.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
SCNpilot_bf_inoc_scaffold_16_curated_158
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(206056..206496)
DNA (441bp) protein (147aa)
azurin n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000319229A
azurin
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_159
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

206635..207183
DNA (549bp) protein (183aa)
kinase inhibitor n=1 Tax=Pseudomonas fuscovaginae RepID=UPI000287DB4A
Kinase inhibitor {ECO:0000313|EMBL:BAQ73608.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
kinase inhibitor; K06910
SCNpilot_bf_inoc_scaffold_16_curated_160
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

207396..208805
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003737001
Uncharacterized protein {ECO:0000313|EMBL:KFN50858.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
SCNpilot_bf_inoc_scaffold_16_curated_161
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(208811..209215)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003659425
Polysaccharide synthesis protein GtrA {ECO:0000313|EMBL:AHX12800.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_162
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(209219..210163)
DNA (945bp) protein (315aa)
RfbJ protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000371DDB5
glycosyl transferase family protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_bf_inoc_scaffold_16_curated_163
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(210156..211172)
DNA (1017bp) protein (339aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
methylthioribose-1-phosphate isomerase n=1 Tax=Dyella ginsengisoli RepID=UPI0003479D93
SCNpilot_bf_inoc_scaffold_16_curated_164
Halomonas salina, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(211381..213066)
DNA (1686bp) protein (562aa)
ABC transporter n=1 Tax=Halomonas smyrnensis RepID=UPI0002FFA337
ABC transporter {ECO:0000313|EMBL:KGE79289.1}; TaxID=42565 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas salina.;"
ABC transporter ATP-binding protein/permease; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_bf_inoc_scaffold_16_curated_165
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

213156..214190
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035CDD2A
iron ABC transporter ATP-binding protein
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFU00604.1}; TaxID=1133849 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis ATCC 700358.;"
SCNpilot_bf_inoc_scaffold_16_curated_166
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(214536..215600)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003762EDF
Poly-beta-hydroxybutyrate polymerase {ECO:0000313|EMBL:KJV36890.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
SCNpilot_bf_inoc_scaffold_16_curated_167
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(215610..216671)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000373FBDE
Uncharacterized protein {ECO:0000313|EMBL:KGM57231.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
SCNpilot_bf_inoc_scaffold_16_curated_168
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

217020..219080
DNA (2061bp) protein (687aa)
hypothetical Cytosolic Protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174505C
Uncharacterized protein {ECO:0000313|EMBL:KIV62739.1}; TaxID=1604022 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_169
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

219259..219822
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C7H7_9FLAO
Contig89, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75658.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_170
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219968..222079)
DNA (2112bp) protein (704aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polynucleotide phosphorylase/polyadenylase n=1 Tax=mine drainage metagenome RepID=T1AAM4_9ZZZZ
SCNpilot_bf_inoc_scaffold_16_curated_171
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(222104..222370)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037058A5
ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_16_curated_172
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(222557..223483)
DNA (927bp) protein (309aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
tRNA pseudouridine synthase B (EC:4.2.1.70)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C0601
SCNpilot_bf_inoc_scaffold_16_curated_173
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

223661..226318
DNA (2658bp) protein (886aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B7A4D3
Serine/threonine protein kinase {ECO:0000313|EMBL:EYR68783.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
serine/threonine protein kinase
SCNpilot_bf_inoc_scaffold_16_curated_174
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(226352..226714)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035F4BA5
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_bf_inoc_scaffold_16_curated_175
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(226967..229735)
DNA (2769bp) protein (923aa)
translation initiation factor IF-2 n=1 Tax=Dyella ginsengisoli RepID=UPI00034844BD
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|SAAS:SAAS00048520}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
translation initiation factor IF-2; K02519 translation initiation factor IF-2
SCNpilot_bf_inoc_scaffold_16_curated_176
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(229794..231284)
DNA (1491bp) protein (497aa)
peptidase M54 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CCB0B
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
NusA antitermination factor; K02600 N utilization substance protein A
SCNpilot_bf_inoc_scaffold_16_curated_177
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231325..231894)
DNA (570bp) protein (190aa)
ribosome maturation protein RimP n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B62819
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_bf_inoc_scaffold_16_curated_178
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(232415..233854)
DNA (1440bp) protein (480aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
NADH dehydrogenase subunit N (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit N n=1 Tax=Dyella japonica RepID=UPI00031BFDA6
SCNpilot_bf_inoc_scaffold_16_curated_179
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233865..235421)
DNA (1557bp) protein (519aa)
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:KGI78166.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KGI78166.1};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
NADH dehydrogenase subunit M (EC:1.6.5.3)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FBA0D
SCNpilot_bf_inoc_scaffold_16_curated_180
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(235446..237506)
DNA (2061bp) protein (687aa)
NADH dehydrogenase subunit L (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit L n=1 Tax=Dyella ginsengisoli RepID=UPI00034A5DAE
NADH:ubiquinone oxidoreductase subunit L {ECO:0000313|EMBL:KJV36910.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Displaying items 151-180 of 540 in total

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