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SCNpilot_bf_inoc_scaffold_1177_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1177_curated_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..104)
DNA (102bp) protein (34aa)
elongation factor Tu n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E1D8E8
tuf2; translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_bf_inoc_scaffold_1177_curated_2

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comp(144..2237)
DNA (2094bp) protein (698aa)
Translation elongation factor 2 (EF-2/EF-G) n=5 Tax=mine drainage metagenome RepID=T1CGF9_9ZZZZ
Translation elongation factor 2 (EF-2/EF-G) {ECO:0000313|EMBL:EQD65414.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
fusA; elongation factor g protein; K02355 elongation factor G
SCNpilot_bf_inoc_scaffold_1177_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2255..2722)
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037A94C1
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SSU ribosomal protein S7P
SCNpilot_bf_inoc_scaffold_1177_curated_4

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comp(2741..3115)
DNA (375bp) protein (125aa)
Ribosomal protein S12, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1AXQ2_9ZZZZ
Ribosomal protein S12, bacterial-type {ECO:0000313|EMBL:EQD65416.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
SCNpilot_bf_inoc_scaffold_1177_curated_5
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3303..7511)
DNA (4209bp) protein (1403aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Rudaea cellulosilytica RepID=UPI0003718CD2
SCNpilot_bf_inoc_scaffold_1177_curated_6
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7536..11702)
DNA (4167bp) protein (1389aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta id=2468509 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_bf_inoc_scaffold_1177_curated_7
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11901..12275)
DNA (375bp) protein (125aa)
50S ribosomal protein L7 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6CC02
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_bf_inoc_scaffold_1177_curated_8
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12336..12860)
DNA (525bp) protein (175aa)
50s ribosomal protein l10 n=1 Tax=mine drainage metagenome RepID=T0ZN36_9ZZZZ
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_bf_inoc_scaffold_1177_curated_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13185..13886)
DNA (702bp) protein (234aa)
50S ribosomal protein L1 n=2 Tax=Rhodanobacter RepID=I4WGB3_9GAMM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ribosomal protein L1
SCNpilot_bf_inoc_scaffold_1177_curated_10
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13891..14319)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=mine drainage metagenome RepID=T1BBN2_9ZZZZ
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_bf_inoc_scaffold_1177_curated_11
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14450..15010)
DNA (561bp) protein (187aa)
transcription antitermination protein NusG n=1 Tax=Dyella japonica RepID=UPI0002FE0789
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
transcription antitermination protein nusG
SCNpilot_bf_inoc_scaffold_1177_curated_12
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15022..15402)
DNA (381bp) protein (127aa)
Protein translocase subunit SecE n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VIS8_9GAMM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
preprotein translocase, SecE subunit
SCNpilot_bf_inoc_scaffold_1177_curated_13
unknown

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comp(15651..15725)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 13 items

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