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SCNpilot_bf_inoc_scaffold_216_curated

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Displaying items 31-60 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_216_curated_31
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35951..36763
DNA (813bp) protein (271aa)
cphB; cyanophycinase (EC:3.4.15.6)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000370C01C
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_216_curated_32
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36881..37372
DNA (492bp) protein (164aa)
Acetyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WML3_9GAMM
Acetyltransferase {ECO:0000313|EMBL:AIF47518.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
acetyltransferase, N-acetylglutamate synthase
SCNpilot_bf_inoc_scaffold_216_curated_33
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37622..38389
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D7190
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_bf_inoc_scaffold_216_curated_34
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38546..39109
DNA (564bp) protein (188aa)
Elongation factor P-like protein id=2555819 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
elongation factor p-like protein; K02356 elongation factor P
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_216_curated_35
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39311..39892)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380D4C9
NUDIX hydrolase
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_bf_inoc_scaffold_216_curated_36
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40045..41526
DNA (1482bp) protein (494aa)
Amino acid permease-associated region n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UNA2_PSEUP
amino acid permease; K03294 basic amino acid/polyamine antiporter, APA family
Amino acid permease-associated region {ECO:0000313|EMBL:AER56606.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_bf_inoc_scaffold_216_curated_37
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42115..42756
DNA (642bp) protein (214aa)
Methylthioribulose-1-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_01677}; Short=MTRu-1-P dehydratase {ECO:0000256|HAMAP-Rule:MF_01677};; EC=4.2.1.109 {ECO:0000256|HAMAP-Rule:MF_01677};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methylthioribulose-1-phosphate dehydratase (EC:4.2.1.109)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E12C8
SCNpilot_bf_inoc_scaffold_216_curated_38
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42753..43301
DNA (549bp) protein (183aa)
Acireductone dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLI1_9GAMM
Acireductone dioxygenase {ECO:0000256|HAMAP-Rule:MF_01682, ECO:0000256|SAAS:SAAS00009702}; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase {ECO:0000256|HAMAP-Rule:MF_01682, ECO:0000256|SAAS:SAAS00090345}; Acireductone dioxygenase (Fe(2+)-requiring) {ECO:0000256|HAMAP-Rule:MF_01682}; Acireductone dioxygenase (Ni(2+)-requiring) {ECO:0000256|HAMAP-Rule:MF_01682}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
hypothetical protein, contains double-stranded beta-helix domain
SCNpilot_bf_inoc_scaffold_216_curated_39
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43356..44036
DNA (681bp) protein (227aa)
Enolase-phosphatase E1 {ECO:0000256|HAMAP-Rule:MF_01681}; EC=3.1.3.77 {ECO:0000256|HAMAP-Rule:MF_01681};; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase {ECO:0000256|HAMAP-Rule:MF_01681}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Enolase-phosphatase E1 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WQJ7_9GAMM
acireductone synthase
SCNpilot_bf_inoc_scaffold_216_curated_40
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44050..45120
DNA (1071bp) protein (357aa)
Peptidase C13 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLH9_9GAMM
Peptidase C13 family
Peptidase C13 family {ECO:0000313|EMBL:AGG88525.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_216_curated_41
Deinococcus sp. RL, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(45057..45746)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NVF5_CHRVO
Adenosine nucleotide hydrolase {ECO:0000313|EMBL:KEF34353.1}; TaxID=1489678 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus sp. RL.;"
hypothetical protein; K06927
SCNpilot_bf_inoc_scaffold_216_curated_42

Not on your lists

comp(46103..47746)
DNA (1644bp) protein (548aa)
Response regulator receiver modulated diguanylate cyclase n=3 Tax=mine drainage metagenome RepID=T0ZBX4_9ZZZZ
Response regulator receiver modulated diguanylate cyclase {ECO:0000313|EMBL:EQD27365.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
diguanylate cyclase
SCNpilot_bf_inoc_scaffold_216_curated_43
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47899..48507)
DNA (609bp) protein (203aa)
phosphoribosyl-AMP cyclohydrolase (EC:3.6.1.31 3.5.4.19)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003672F1E
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_216_curated_44
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48504..49274)
DNA (771bp) protein (257aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
imidazole glycerol phosphate synthase subunit hisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRG6_9GAMM
SCNpilot_bf_inoc_scaffold_216_curated_45
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49268..49996)
DNA (729bp) protein (243aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.
1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase (EC:5.3.1.16)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036D9160
SCNpilot_bf_inoc_scaffold_216_curated_46
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49993..50583)
DNA (591bp) protein (197aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
imidazole glycerol phosphate synthase subunit hisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8G0_9GAMM
SCNpilot_bf_inoc_scaffold_216_curated_47
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50580..51680)
DNA (1101bp) protein (367aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
imidazoleglycerol-phosphate dehydratase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037724F0
Histidine biosynthesis bifunctional protein HisB {ECO:0000256|SAAS:SAAS00082593}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_bf_inoc_scaffold_216_curated_48
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51677..52744)
DNA (1068bp) protein (356aa)
histidinol phosphate aminotransferase apoenzyme (EC:2.6.1.9)
histidinol-phosphate aminotransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000347EC31
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_216_curated_49
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52741..54057)
DNA (1317bp) protein (439aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Histidinol dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8F7_9GAMM
histidinol dehydrogenase
SCNpilot_bf_inoc_scaffold_216_curated_50

Not on your lists

comp(54054..54953)
DNA (900bp) protein (300aa)
ATP phosphoribosyltransferase; K00765 ATP phosphoribosyltransferase [EC:2.4.2.17]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E34C1
ATP phosphoribosyltransferase {ECO:0000313|EMBL:EQD70443.1}; Protein containing ATP phosphoribosyltransferase, catalytic region {ECO:0000313|EMBL:EQD80748.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_bf_inoc_scaffold_216_curated_51
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54950..55351)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C8DDF
TrpR, YerC/YecD {ECO:0000313|EMBL:GAN45807.1}; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
TrpR-related protein YerC/YecD
SCNpilot_bf_inoc_scaffold_216_curated_52
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55863..57734
DNA (1872bp) protein (624aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5AEDA
Uncharacterized protein {ECO:0000313|EMBL:KFN46071.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
response regulator receiver domain protein (CheY-)
SCNpilot_bf_inoc_scaffold_216_curated_53
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

57923..60319
DNA (2397bp) protein (799aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P2L5_9DELT
peptidase m14, carboxypeptidase a
Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
SCNpilot_bf_inoc_scaffold_216_curated_54
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60586..61875)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037DD0D5
Uncharacterized protein {ECO:0000313|EMBL:AIB14627.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
conserved hypothetical protein; putative signal peptide
SCNpilot_bf_inoc_scaffold_216_curated_55
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61878..63779)
DNA (1902bp) protein (634aa)
histidine ammonia-lyase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003828466
Histidine ammonia-lyase {ECO:0000313|EMBL:GAN45806.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
histidine ammonia-lyase
SCNpilot_bf_inoc_scaffold_216_curated_56
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(64015..65388)
DNA (1374bp) protein (458aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthase n=1 Tax=Dyella ginsengisoli RepID=UPI00034BF0D5
SCNpilot_bf_inoc_scaffold_216_curated_57
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66098..67474
DNA (1377bp) protein (459aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036EF3DA
RNA helicase {ECO:0000313|EMBL:KGI78821.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_bf_inoc_scaffold_216_curated_58
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67654..68739
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C3086
Membrane protein {ECO:0000313|EMBL:AKC86514.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_216_curated_59
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68869..71376)
DNA (2508bp) protein (836aa)
Regulatory P domain-containing protein n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F3X4_VERMA
regulatory P domain-containing protein
Regulatory P domain-containing protein {ECO:0000313|EMBL:AEB46620.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
SCNpilot_bf_inoc_scaffold_216_curated_60
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71687..73855
DNA (2169bp) protein (723aa)
peptidase M3 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B2EA1C
Dipeptidyl carboxypeptidase Dcp
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Displaying items 31-60 of 69 in total

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