ggKbase home page

SCNpilot_bf_inoc_scaffold_320_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_320_curated_1
unknown

Not on your lists

comp(1..255)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_320_curated_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(604..1977)
DNA (1374bp) protein (458aa)
RNA helicase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B67677
Uncharacterized protein {ECO:0000313|EMBL:KFN42840.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
DNA/RNA helicase, superfamily II
SCNpilot_bf_inoc_scaffold_320_curated_3
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2089..3864)
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003605253
Uncharacterized protein {ECO:0000313|EMBL:KFN40995.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_320_curated_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4156..5577)
DNA (1422bp) protein (474aa)
Deoxyribodipyrimidine photo lyase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VI59_9GAMM
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:AHX13045.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
deoxyribodipyrimidine photolyase
SCNpilot_bf_inoc_scaffold_320_curated_5
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5726..10780
DNA (5055bp) protein (1685aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262AE09
Uncharacterized protein {ECO:0000313|EMBL:AJC45623.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
Large extracellular alpha-helical protein
SCNpilot_bf_inoc_scaffold_320_curated_6
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11207..13633
DNA (2427bp) protein (809aa)
pbpC; bifunctional penicillin-binding protein 1C; K05367 penicillin-binding protein 1C [EC:2.4.1.-] rbh
penicillin-binding protein 1C n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B6C229
Penicillin-binding protein {ECO:0000313|EMBL:KHM93820.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
SCNpilot_bf_inoc_scaffold_320_curated_7
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13664..14092)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI0003958C4B
Uncharacterized protein {ECO:0000313|EMBL:CCE10200.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_320_curated_8
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14188..14694)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN16_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EXI92787.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_320_curated_9
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14826..15146)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:KER74296.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
SCNpilot_bf_inoc_scaffold_320_curated_10
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15143..16987)
DNA (1845bp) protein (615aa)
iron transporter FeoB n=1 Tax=Singularimonas variicoloris RepID=UPI000376DCEB
Iron transporter FeoB {ECO:0000313|EMBL:KJV30404.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
ferrous iron transport protein B; K04759 ferrous iron transport protein B
SCNpilot_bf_inoc_scaffold_320_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16984..17280)
DNA (297bp) protein (99aa)
Fe2+ transport system protein A n=1 Tax=Rhodanobacter denitrificans RepID=M4NKU5_9GAMM
Fe2+ transport system protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:AGG88386.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_320_curated_12
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17847..18641
DNA (795bp) protein (265aa)
enoyl-CoA hydratase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B63592
enoyl-CoA hydratase/carnithine racemase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_320_curated_13
unknown

Not on your lists

18650..19345
DNA (696bp) protein (232aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_320_curated_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19347..19739
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZCT2_XANCT
Glyoxalase {ECO:0000313|EMBL:AKC87919.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_bf_inoc_scaffold_320_curated_15
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19819..21837
DNA (2019bp) protein (673aa)
acetyl/propionyl-CoA carboxylase, alpha subunit (EC:6.3.4.14 6.4.1.4)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003708E6C
Uncharacterized protein {ECO:0000313|EMBL:KFN41072.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
SCNpilot_bf_inoc_scaffold_320_curated_16
unknown

Not on your lists

21924..22634
DNA (711bp) protein (237aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_320_curated_17
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22631..23524
DNA (894bp) protein (298aa)
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:KFN52162.1}; EC=4.1.3.4 {ECO:0000313|EMBL:KFN52162.1};; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
hydroxymethylglutaryl-CoA lyase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003794BF1
SCNpilot_bf_inoc_scaffold_320_curated_18
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23865..27575)
DNA (3711bp) protein (1237aa)
Ankyrin n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DXX8_9GAMM
Ankyrin {ECO:0000313|EMBL:EGV32770.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_320_curated_19
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(27787..28233)
DNA (447bp) protein (149aa)
Two-component system response regulator n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PAV0_9DELT
Two-component response regulator contains FOG: CheY-like receiver {ECO:0000313|EMBL:GAN33598.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
response regulator receiver
SCNpilot_bf_inoc_scaffold_320_curated_20
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(28230..30935)
DNA (2706bp) protein (902aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXZ6_9BACT
sensory box histidine kinase
Tax=RBG_16_Chloroflexi_68_14_curated
SCNpilot_bf_inoc_scaffold_320_curated_21
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30928..33099)
DNA (2172bp) protein (724aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0P3_9RHOO
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
Tax=RBG_13_Deltaproteobacteria_65_10_curated
SCNpilot_bf_inoc_scaffold_320_curated_22
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33333..34634)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003655565
Amidohydrolase {ECO:0000313|EMBL:KGB56840.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
putative hydrolase
SCNpilot_bf_inoc_scaffold_320_curated_23
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34895..35305
DNA (411bp) protein (137aa)
Lipoprotein n=8 Tax=Klebsiella RepID=D6GHE2_9ENTR
lipoprotein
Choline dehydrogenase {ECO:0000313|EMBL:EWD81250.1}; TaxID=1400171 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae UCI 18.;"
SCNpilot_bf_inoc_scaffold_320_curated_24
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35313..35981
DNA (669bp) protein (223aa)
putative hydrolase n=1 Tax=Xanthomonas sacchari RepID=UPI0002630107
Hydrolase {ECO:0000313|EMBL:EYR68399.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
putative hydrolase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_bf_inoc_scaffold_320_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36058..36426
DNA (369bp) protein (123aa)
ArsR family transcriptional regulatory protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NKP0_GLOVI
Pilus assembly protein CpaF {ECO:0000313|EMBL:KFC67244.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcription regulator ArsR
SCNpilot_bf_inoc_scaffold_320_curated_26
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

36575..37087
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Leptospira fainei serovar Hurstbridge str. BUT 6 RepID=S3V4S4_9LEPT
Glutathione s-transferase protein {ECO:0000313|EMBL:AIE84564.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_320_curated_27
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

37225..37641
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036DE5E3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84332.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_bf_inoc_scaffold_320_curated_28
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37647..38645
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2RUG9_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EYR67007.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_320_curated_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38731..39276)
DNA (546bp) protein (182aa)
gamma-glutamyl cyclotransferase, partial n=1 Tax=Herbaspirillum lusitanum RepID=UPI0003771BD6
Gamma-glutamyl cyclotransferase {ECO:0000313|EMBL:KGI77498.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ChaC family protein; K07232 cation transport protein ChaC
SCNpilot_bf_inoc_scaffold_320_curated_30
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39329..41239)
DNA (1911bp) protein (637aa)
Putative esterase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MZZ0_CORCM
besA1; putative esterase
Putative esterase {ECO:0000313|EMBL:AFE08190.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
Displaying items 1-30 of 48 in total

View Taxonomy